View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14010_low_9 (Length: 419)
Name: NF14010_low_9
Description: NF14010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14010_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 147 - 402
Target Start/End: Complemental strand, 9486360 - 9486107
Alignment:
| Q |
147 |
ggaaagtgttatgacttttaaaattatattttattnnnnnnnnnntacatatttaatttatttttaaatctgaaccctcgaannnnnnnatcacatttct |
246 |
Q |
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| T |
9486360 |
ggaaagtgttatgacttttaaaattatattttattaaaaaaaa--tacatgtttaatttatttttaaatctcaaccctcgaatttttttatcatatttct |
9486263 |
T |
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| Q |
247 |
ttcatccatgaccctaaataaactaaatggagcataaggtaaatgggccataaactcgccattaacaatactataaaccatattagtatagtagaaaaca |
346 |
Q |
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| T |
9486262 |
ttcattcatgaccctaaataaactaaatggagcataaggtaaatgggccataaactcgccattaacaatactataaaccatattagtatagtagaaaaca |
9486163 |
T |
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| Q |
347 |
caacagattccaatgcaaaagataaattatttcactactacttgtaacaatactat |
402 |
Q |
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| T |
9486162 |
caacagattccaatgcaaaagatagattatttcactactacttgtaacaatactat |
9486107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9486519 - 9486403
Alignment:
| Q |
1 |
caatgaaaagaagacgggagaggagtgatcttgttattgagggatgaacggatgcgatcaggatgaacaacggtacgatcgatggacgttgaaggtgatg |
100 |
Q |
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| T |
9486519 |
caatgaaaagaagacgggagaggagtgatcttgttattgagggatgaacggctgcgatcgggatgaacgacggtacgatcgatggatcttgaaggtgatg |
9486420 |
T |
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| Q |
101 |
agagggtagaggaaaag |
117 |
Q |
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| T |
9486419 |
agagggtagaggaaaag |
9486403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 33029558 - 33029602
Alignment:
| Q |
238 |
cacatttctttcatccatgaccctaaataaactaaatggagcata |
282 |
Q |
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| T |
33029558 |
cacatgtctttcatccaataccctaaatgaactaaatggagcata |
33029602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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