View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14011_high_4 (Length: 219)
Name: NF14011_high_4
Description: NF14011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14011_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 43994703 - 43994910
Alignment:
| Q |
12 |
aacctgtgtgactctgagggaaatttggttattagaagaagcttggaaaaattgaacatctgagtggatgataggtggtgaagcaatccaaccaaatgaa |
111 |
Q |
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| T |
43994703 |
aacctgtgtgactctgagggaaatttggttattagaagaagcttggaaaaattgaacatctgaatggatgataggtggtgaagcaatcaaaccaaatgaa |
43994802 |
T |
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| Q |
112 |
cacttcatatgatccacttacttgtccaaacaatcgttactagagatgtcactgaattgaaatcaaaatcgattctcaataaactagcaaaaccgtataa |
211 |
Q |
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| T |
43994803 |
cacttcatatgatccacttacttgtccaaacaatcgttactagagatgtcactgaattgaaatcaaaatcgattctcaataaactagcaaaaccgtataa |
43994902 |
T |
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| Q |
212 |
ctccaaat |
219 |
Q |
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||||||| |
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| T |
43994903 |
atccaaat |
43994910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 26688481 - 26688443
Alignment:
| Q |
165 |
gaattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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| T |
26688481 |
gaatttaaattaaaatcgattctcaataaactagcaaaa |
26688443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 26958212 - 26958174
Alignment:
| Q |
165 |
gaattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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| T |
26958212 |
gaatttaaattaaaatcgattctcaataaactagcaaaa |
26958174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 30478625 - 30478587
Alignment:
| Q |
165 |
gaattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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| T |
30478625 |
gaattcaaattaaaatcgattctcaataaactagcaaaa |
30478587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 48013624 - 48013662
Alignment:
| Q |
165 |
gaattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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| T |
48013624 |
gaattcaaattaaaatcgattctcaataaactagcaaaa |
48013662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 19521657 - 19521619
Alignment:
| Q |
165 |
gaattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
19521657 |
gaattcaaattaaaatcgattctcaataaactagcaaaa |
19521619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 45811038 - 45811001
Alignment:
| Q |
166 |
aattgaaatcaaaatcgattctcaataaactagcaaaa |
203 |
Q |
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|||| |||| |||||||||||||||||||||||||||| |
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| T |
45811038 |
aattcaaattaaaatcgattctcaataaactagcaaaa |
45811001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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