View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14011_low_1 (Length: 346)
Name: NF14011_low_1
Description: NF14011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14011_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 40284504 - 40284814
Alignment:
| Q |
18 |
attagaataaaaatggatacgagcacgcatgaaagaatttatcaaaaagaaaagtaaaacctaacaaatatcaagtgtccagagatactgatccagatca |
117 |
Q |
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| T |
40284504 |
attaaaataaaaatggacacgagcacgcatgaaagaattgatcaaaaagaaaagtaaaacctaacacatatcaagtgtccagagatactgatccagatca |
40284603 |
T |
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| Q |
118 |
agaattcaagatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaatttgtagtactctatggaaggaaggttttgttt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40284604 |
agaattca-gatcaaaccaaacaaacaaattctaaaaacaaaagggatgcacagaaaatataatgaatttgtagtactctatggaaggaaggatttgttt |
40284702 |
T |
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| Q |
218 |
ggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40284703 |
ggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttctgtgtatatcagcatgtttgcagaaatacttcaatt |
40284802 |
T |
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| Q |
318 |
gatcgagcttgc |
329 |
Q |
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|||||||||||| |
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| T |
40284803 |
gatcgagcttgc |
40284814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 183 - 321
Target Start/End: Original strand, 40279707 - 40279845
Alignment:
| Q |
183 |
aatttgtagtactctatggaaggaaggttttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
282 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40279707 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40279806 |
T |
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| Q |
283 |
gtgtatatcagcatgtttgcagaaatacttcaattgatc |
321 |
Q |
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| T |
40279807 |
gtgtatatcagcatgtttgcagaaatacttcaattgatc |
40279845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 40458643 - 40458505
Alignment:
| Q |
183 |
aatttgtagtactctatggaaggaaggttttgtttggttggagttgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
282 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458643 |
aatttgtagtactctatggaaggaagggcgtgtttggttggagctgtttgcataaaccaaaataagttgaataaatcaatctatttttggcacctgttct |
40458544 |
T |
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| Q |
283 |
gtgtatatcagcatgtttgcagaaatacttcaattgatc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40458543 |
gtgtatatcagcatgtttgcagaaatacttcaattgatc |
40458505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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