View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14012_high_2 (Length: 408)

Name: NF14012_high_2
Description: NF14012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14012_high_2
NF14012_high_2
[»] chr8 (5 HSPs)
chr8 (11-408)||(36934671-36935065)
chr8 (356-408)||(34897086-34897136)
chr8 (356-408)||(24362210-24362260)
chr8 (356-408)||(31236585-31236635)
chr8 (357-408)||(39954288-39954337)
[»] chr7 (10 HSPs)
chr7 (330-408)||(32308121-32308197)
chr7 (356-408)||(19206051-19206101)
chr7 (337-401)||(35297661-35297723)
chr7 (358-406)||(22306534-22306581)
chr7 (330-401)||(26329364-26329433)
chr7 (330-408)||(24339643-24339719)
chr7 (356-408)||(20549792-20549842)
chr7 (356-408)||(21828413-21828463)
chr7 (364-408)||(29787385-29787427)
chr7 (356-408)||(42720898-42720948)
[»] chr1 (18 HSPs)
chr1 (332-403)||(5944287-5944358)
chr1 (347-408)||(6427351-6427410)
chr1 (330-405)||(44482234-44482307)
chr1 (330-408)||(36905998-36906074)
chr1 (356-408)||(9709821-9709871)
chr1 (357-408)||(12443469-12443518)
chr1 (330-408)||(9629882-9629958)
chr1 (330-408)||(25361887-25361963)
chr1 (332-403)||(31694694-31694765)
chr1 (331-408)||(5376483-5376558)
chr1 (364-408)||(398781-398823)
chr1 (329-390)||(6612152-6612213)
chr1 (356-408)||(25098563-25098613)
chr1 (364-408)||(36878462-36878504)
chr1 (356-408)||(39953154-39953204)
chr1 (364-408)||(9033023-9033066)
chr1 (372-408)||(18471299-18471335)
chr1 (330-408)||(34371715-34371790)
[»] chr4 (8 HSPs)
chr4 (330-408)||(22234872-22234949)
chr4 (356-408)||(35723392-35723443)
chr4 (355-408)||(36635325-36635376)
chr4 (364-408)||(8423734-8423776)
chr4 (348-408)||(15029766-15029824)
chr4 (356-408)||(40613451-40613501)
chr4 (357-408)||(22440609-22440658)
chr4 (364-408)||(49431026-49431069)
[»] chr6 (12 HSPs)
chr6 (356-408)||(7265601-7265651)
chr6 (356-408)||(19040353-19040403)
chr6 (356-408)||(30866152-30866202)
chr6 (331-406)||(9617437-9617510)
chr6 (354-408)||(5462687-5462739)
chr6 (347-408)||(7151413-7151472)
chr6 (347-408)||(9025493-9025552)
chr6 (356-408)||(7377980-7378030)
chr6 (356-408)||(9629384-9629434)
chr6 (332-408)||(16766698-16766772)
chr6 (348-408)||(32511666-32511724)
chr6 (356-408)||(7027242-7027293)
[»] chr5 (5 HSPs)
chr5 (332-408)||(3966504-3966578)
chr5 (347-408)||(6471888-6471947)
chr5 (356-408)||(30502396-30502446)
chr5 (356-408)||(30542739-30542789)
chr5 (337-408)||(32766932-32767001)
[»] chr3 (7 HSPs)
chr3 (356-408)||(7928451-7928501)
chr3 (333-408)||(8039820-8039893)
chr3 (356-408)||(40993343-40993394)
chr3 (330-408)||(16192732-16192808)
chr3 (364-408)||(5407263-5407305)
chr3 (347-403)||(25948886-25948940)
chr3 (356-408)||(7948959-7949010)
[»] chr2 (7 HSPs)
chr2 (356-408)||(21616763-21616813)
chr2 (364-403)||(5040738-5040777)
chr2 (358-408)||(28677910-28677958)
chr2 (330-408)||(44860321-44860397)
chr2 (356-408)||(23718027-23718077)
chr2 (356-408)||(24105699-24105749)
chr2 (356-408)||(37411252-37411302)
[»] scaffold0171 (1 HSPs)
scaffold0171 (329-389)||(23529-23589)
[»] scaffold0123 (1 HSPs)
scaffold0123 (356-408)||(44533-44583)
[»] scaffold0019 (1 HSPs)
scaffold0019 (364-408)||(71724-71768)


Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 36935065 - 36934671
Alignment:
Q  11 cagagaaaatggagttggatttaacatcgaaaacagcagaaacattgtttgaaggagacggtggtagttttgttcnnnnnnnnnnnnnnggagacggtgg 110  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||    
T  36935065 cagaaaaaatggagttggatttaacaccgaaaacagcagaaacattgtttgaaggagacggtggtagttttgttcaaaaaaaataaaa-ggagacggtgg 36934967  T
Q  111 tagttactacgtttggtcgagttctcaaatgccagtgttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36934966 tagttactacgtttggtcgagttctcaaatgccagtgttagcctcaaccaacgttggtgctggtcgccttgtgcttaagcctcaaggctttgctcttcct 36934867  T
Q  211 cattatgcagattcctctaaagttgcttatgtcattcaaggtcagtcactcccatctgtattgttacgaagcacatacacttcttggattagcctgtccc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  36934866 cattatgcagattcctctaaagttgcttatgtcattcaaggtcagtcactcccatctgtattgttaccaagcactgacacttcttggattagcctgtccc 36934767  T
Q  311 gttgtctgacacgcatcgatcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||  || |||||||||||||||    
T  36934766 gttgtctgacacgcatcgatcgtgtccgatatcgaaacgacgccaacacatataattacaatgaattatgtgattttt--tcgaattattagcggtgt 36934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 34897136 - 34897086
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  34897136 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 34897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 24362210 - 24362260
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  || ||||||||||||||||||||    
T  24362210 acacatataattacactgaattatgtga--ttctctcaaattattagcggtgt 24362260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 31236585 - 31236635
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  31236585 acacatataattacattgaattatgtga--ttttctcaaattattagcagtgt 31236635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 39954288 - 39954337
Alignment:
Q  357 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||| ||||||| | ||||||||||||||  |||||||||||||||||||    
T  39954288 cacatataattacactaaattatgtgatttt--ctcaaattattagcggtgt 39954337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 32308197 - 32308121
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||| ||| ||| ||||| |  ||||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  32308197 tcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtga--ttttctcaaattattagcggtgt 32308121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 19206101 - 19206051
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||| ||||||||||||||  |||||||||||||||||||||||    
T  19206101 acacatataattataatgaattatgtga--ttttctcaaattattagcggtgt 19206051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 35297661 - 35297723
Alignment:
Q  337 cgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattatta 401  Q
    ||||||| | ||||| |||||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  35297661 cgacatcaacacgacaccaacacatataattataatgaattatgtga--ttttctcaaattatta 35297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 22306581 - 22306534
Alignment:
Q  358 acatacaattacaatgaattatgtgattttttctcaaattattagcggt 406  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  22306581 acatacgattacactgaattatgtgatttttt-tcaaattattagcggt 22306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 26329364 - 26329433
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattatta 401  Q
    ||||||| |||| ||| |||||||| ||||||| ||||||| |||||| ||||  |||||||||||||||||    
T  26329364 tcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtg--tttttctcaaattatta 26329433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 24339719 - 24339643
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||| ||| ||||| || |||| |  ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  24339719 tcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttt--tcaaattattagctgtgt 24339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 20549842 - 20549792
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  20549842 acacatataattacactgaattacgtgatttt--ctcaaattattagcggtgt 20549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 21828413 - 21828463
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||||||||| |||||||||  ||||||||||||| || ||||||    
T  21828413 acacatacaattacaatggattatgtga--ttttctcaaattactaacggtgt 21828463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 29787385 - 29787427
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  29787385 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 29787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 42720898 - 42720948
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| | |||||||||||||||  ||||||||||||||||||    
T  42720898 acacatataattacatttaattatgtgattttt--tcaaattattagcggtgt 42720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 403
Target Start/End: Complemental strand, 5944358 - 5944287
Alignment:
Q  332 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 403  Q
    ||||||| |||||| ||||| || |||| || ||||||| |||||||||||||||||| |||||||||||||    
T  5944358 gtgtccgtcatcgacacgacaccgacacttataattacactgaattatgtgattttttttcaaattattagc 5944287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 6427410 - 6427351
Alignment:
Q  347 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| |||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  6427410 acgacaccaacacatataattacattgaattatgtga--ttttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 44482307 - 44482234
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcgg 405  Q
    |||||||||||| ||| ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||| |||||    
T  44482307 tcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtga--ttttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 36906074 - 36905998
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||  || || ||||||||||||| ||||||  ||||||||||||  |||||||| ||||||||||||||    
T  36906074 tcgtgtccgacactgacacaacgccaacacatataattactctgaattatgtga--ttttctcagattattagcggtgt 36905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 9709871 - 9709821
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||||||| |||||||||||  |||||||||||||||||||||||    
T  9709871 acacatataattacaacgaattatgtga--ttttctcaaattattagcggtgt 9709821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 12443469 - 12443518
Alignment:
Q  357 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  12443469 cacatacaattacactgaattatgtga--ttttctcaaattattagctgtgt 12443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 9629882 - 9629958
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||||||| ||||| || |||| || ||| ||| |||||||| |||  |||| ||||||||||||||||||    
T  9629882 tcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatga--ttttatcaaattattagcggtgt 9629958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 25361963 - 25361887
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||| ||| ||||| |  ||||||| ||||||| ||||||||||||  |||||||||||||| || |||||    
T  25361963 tcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtga--ttttctcaaattatcagtggtgt 25361887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 403
Target Start/End: Original strand, 31694694 - 31694765
Alignment:
Q  332 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 403  Q
    |||||||||| ||| ||||| || |||| |  ||||| | |||||||||||||||||| |||||||||||||    
T  31694694 gtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgattttttttcaaattattagc 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 5376483 - 5376558
Alignment:
Q  331 cgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||||| ||||| || |||| |  ||||||| ||||||||||  | |||||| ||||||||||||||||    
T  5376483 cgtgtccgacatcgacacgacaccgacacttttaattacactgaattatgt--tattttcttaaattattagcggtgt 5376558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 398781 - 398823
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  398781 aattacactgaattatgtgattttt--tcaaattattagcggtgt 398823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 6612152 - 6612213
Alignment:
Q  329 atcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttc 390  Q
    ||||||||||||||||| ||||| || |||| |  ||||||| |||||||||| ||||||||    
T  6612152 atcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttc 6612213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 25098563 - 25098613
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||| ||||||||    
T  25098563 acacatataattacactgaattatgtga--ttttctcaaattatcagcggtgt 25098613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 36878504 - 36878462
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  36878504 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 36878462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 39953154 - 39953204
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||||| | ||||||||||  |||||| ||||||||||||||||    
T  39953154 acacatacaattacactaaattatgtga--ttttctaaaattattagcggtgt 39953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 9033023 - 9033066
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||    
T  9033023 aattacactgaattatgtgatttttt-tcaaattattagtggtgt 9033066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 18471335 - 18471299
Alignment:
Q  372 tgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  18471335 tgaattatgtgattttttttcaaattattagctgtgt 18471299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 34371790 - 34371715
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||| ||||||| | | ||||| || ||||||| ||||||| |||||||||||||||| ||   |||||||||||||||    
T  34371790 tcgtatccgacaccaacacgacaccgacacatataattacactgaattatgtgattttctc---aattattagcggtgt 34371715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 22234872 - 22234949
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||| ||| ||||| || ||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||    
T  22234872 tcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgatttttt-tcaaatttttagcggtgt 22234949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 35723392 - 35723443
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  35723392 acacatataattacattgaattatgtg-tattttctcaaattattagcggtgt 35723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 408
Target Start/End: Complemental strand, 36635376 - 36635325
Alignment:
Q  355 aacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||| ||||||| ||||||||||||  ||||||||||||||||| |||||    
T  36635376 aacacatataattacactgaattatgtga--ttttctcaaattattagtggtgt 36635325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 8423734 - 8423776
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  8423734 aattacactgaattatgtgatttt--ctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 15029824 - 15029766
Alignment:
Q  348 cgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||| |||||||||| ||||||| ||||||||||||| |||  ||||||||||||| ||||    
T  15029824 cgacaccaacacatataattacactgaattatgtgatattt--tcaaattattagcagtgt 15029766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 40613501 - 40613451
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||| ||||||||||||    
T  40613501 acacatataattacactgaattatgtga--ttttctcaaaatattagcggtgt 40613451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 22440609 - 22440658
Alignment:
Q  357 cacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||| ||||||| ||||||||||||  |||||||||||||||| ||||||    
T  22440609 cacatataattacactgaattatgtga--ttttctcaaattattaacggtgt 22440658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 49431069 - 49431026
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||||||||||||||||| ||||||||||||| ||||    
T  49431069 aattacactgaattatgtgatttttt-tcaaattattagctgtgt 49431026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 7265601 - 7265651
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  7265601 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 19040403 - 19040353
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  19040403 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 19040353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 30866152 - 30866202
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  30866152 acacatataattacattgaattatgtga--ttttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 9617510 - 9617437
Alignment:
Q  331 cgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggt 406  Q
    ||||||||||| ||  ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||| ||||    
T  9617510 cgtgtccgacaccgcgacgacaccgacacatataattacattgaattatgtga--ttttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 5462739 - 5462687
Alignment:
Q  354 caacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  5462739 caacatatataattacaatgaattatgtga--ttttctcaaattattaacggtgt 5462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 7151472 - 7151413
Alignment:
Q  347 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| |||||||||| ||||||| | |||||||||||||||  |||||||||||| |||||    
T  7151472 acgacaccaacacatataattacacttaattatgtgattttt--tcaaattattagaggtgt 7151413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 9025493 - 9025552
Alignment:
Q  347 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  9025493 acgacaccgacacatataattacactgaattatgtga--ttttctcaaattattagcagtgt 9025552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 7378030 - 7377980
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| ||||||||||    
T  7378030 acacatataattacattgaattatgtga--ttttctcaaatttttagcggtgt 7377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 9629434 - 9629384
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  ||||||||||||||| |||||||    
T  9629434 acacatataattacattgaattatgtga--ttttctcaaattattggcggtgt 9629384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 16766772 - 16766698
Alignment:
Q  332 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||||| ||| ||||| || |||| |  ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  16766772 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttt--tcaaattattagctgtgt 16766698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 32511666 - 32511724
Alignment:
Q  348 cgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||| ||||||| || ||||||| ||||||||||||  |||||| ||||||||||||||||    
T  32511666 cgacaccaacacttataattacactgaattatgtga--ttttcttaaattattagcggtgt 32511724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 7027293 - 7027242
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||| || |||||    
T  7027293 acacatataattacactgaattatgtgatttttt-tcaaattatcaggggtgt 7027242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 3966578 - 3966504
Alignment:
Q  332 gtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||  || ||||| || ||||||| ||||||| |||||| |||||||||  |||||||||||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataattacactgaattgtgtgatttt--ctcaaattattagcggtgt 3966504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 6471888 - 6471947
Alignment:
Q  347 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| || ||||||| ||||||| ||||||||||||  |||||||||||||||||| ||||    
T  6471888 acgacacccacacatataattacactgaattatgtga--ttttctcaaattattagccgtgt 6471947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 30502396 - 30502446
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  30502396 acacatataattacactgaattaagtgatttt--ctcaaattattagcggtgt 30502446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 30542739 - 30542789
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||| ||||||||  |||||||||||||||||||    
T  30542739 acacatataattacactgaattaagtgatttt--ctcaaattattagcggtgt 30542789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 32766932 - 32767001
Alignment:
Q  337 cgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| ||| ||||| | |||||||| ||||||| |||||| || ||||||  |||||||||||||||||||    
T  32766932 cgacaccgacacgacacaaacacatataattacattgaattgtgcgatttt--ctcaaattattagcggtgt 32767001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 7928501 - 7928451
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  7928501 acacatataattacactgaattatgtgattttt--tcaaattattagcggtgt 7928451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 8039820 - 8039893
Alignment:
Q  333 tgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||| ||| ||||| || ||||||| ||||||| |||||||| | |||||  |||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactgaattatataatttt--ctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 40993343 - 40993394
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||    
T  40993343 acacatataattacactgaattatgtgatttttt-ttaaattattagcggtgt 40993394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Original strand, 16192732 - 16192808
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||| ||| |||||  ||||||||| ||||||| |||||||||| |||||  |||||||||||| ||||||    
T  16192732 tcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttatttt--ctcaaattattaacggtgt 16192808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 5407263 - 5407305
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||    
T  5407263 aattacaatgaattatgtga--ttttctcaaatttttagcggtgt 5407305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 25948886 - 25948940
Alignment:
Q  347 acgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagc 403  Q
    ||||| ||||||| || ||||||| |||||||||||||||||  |||||||||||||    
T  25948886 acgacaccaacacttataattacactgaattatgtgattttt--tcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 7949010 - 7948959
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||||||||||| |||||||||| | ||||||||||| ||||| ||||||    
T  7949010 acacatacaattacattgaattatgtca-tttttctcaaactattatcggtgt 7948959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 21616813 - 21616763
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||||||||||||||    
T  21616813 acacatataattacactgaattatgtga--ttttctcaaattattagcggtgt 21616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 403
Target Start/End: Complemental strand, 5040777 - 5040738
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagc 403  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  5040777 aattacattgaattatgtgattttttttcaaattattagc 5040738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 28677958 - 28677910
Alignment:
Q  358 acatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||| ||||||| |||||||||||||||||  ||||||||||||||||||    
T  28677958 acatataattacactgaattatgtgattttt--tcaaattattagcggtgt 28677910  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 44860397 - 44860321
Alignment:
Q  330 tcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    |||||||| ||| | | ||||| || ||||||| ||||||| ||||||||| ||||||  |||||||||||||||||||    
T  44860397 tcgtgtccaacaccaacacgacaccgacacatataattacactgaattatgcgatttt--ctcaaattattagcggtgt 44860321  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 23718077 - 23718027
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||||||    
T  23718077 acacatataattacactgaattatgtgacttt--ctcaaattattagcggtgt 23718027  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 24105749 - 24105699
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| |||||||||||| |||  |||||||||||||||||||    
T  24105749 acacatataattacactgaattatgtgacttt--ctcaaattattagcggtgt 24105699  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 37411252 - 37411302
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||| ||| ||||||||||||||||  |||||||||||||||||||    
T  37411252 acacatataatcacactgaattatgtgatttt--ctcaaattattagcggtgt 37411302  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 23589 - 23529
Alignment:
Q  329 atcgtgtccgacatcgaaacgacgccaacacatacaattacaatgaattatgtgatttttt 389  Q
    ||||||||||||| ||||||||| |  |||| || ||||||| ||||||||||||||||||    
T  23589 atcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgatttttt 23529  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 44533 - 44583
Alignment:
Q  356 acacatacaattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| ||||||| ||||||||||||  |||||||||||| ||||||||||    
T  44533 acacatataattacactgaattatgtga--ttttctcaaatttttagcggtgt 44583  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 71768 - 71724
Alignment:
Q  364 aattacaatgaattatgtgattttttctcaaattattagcggtgt 408  Q
    ||||||| |||||| ||||||||||| ||||||||||||| ||||    
T  71768 aattacactgaattgtgtgattttttttcaaattattagctgtgt 71724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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