View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14012_high_3 (Length: 355)
Name: NF14012_high_3
Description: NF14012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14012_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 90 - 317
Target Start/End: Original strand, 39336187 - 39336416
Alignment:
| Q |
90 |
atggtagatttggtaaacttcattatgtttctcttccaagcccggacgaggacgaccgtgttaaaatattgaaaactcttgcaaagggtagacgtattga |
189 |
Q |
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| T |
39336187 |
atggtagatttggtaaacttcattatgtttctcttccaagcccggacgaggacgaccgtgttaaaatattgaaaactcttgcaaagggtagacatattga |
39336286 |
T |
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| Q |
190 |
tgccagcgtggatttga--gtctcattgcaagaatggaagattgtgaaaactttagtggcgcggatcttgctgcattggtatgtttctactctattttag |
287 |
Q |
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| T |
39336287 |
tgccagcgtggatttgagtgtgtcattgcaagaatggaagattgtgaaaactttagtggcgcggatcttgctgcattggtatgtttctactctattttag |
39336386 |
T |
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| Q |
288 |
tttgtatcgactccctatgttcagttccat |
317 |
Q |
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| T |
39336387 |
tttgtatcgactccctatgttcggttccat |
39336416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39336128 - 39336175
Alignment:
| Q |
1 |
gcttagttattttacttcatatcatgttgtgcattcaatcaatttctc |
48 |
Q |
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| T |
39336128 |
gcttagttattttacttcatatcatgttgtgcattcaatcaatttctc |
39336175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 277
Target Start/End: Original strand, 790778 - 791004
Alignment:
| Q |
45 |
tctcgttttgcaggcctgaggcgatggaccctgctctcttacgacatggtagatttggtaaacttcattatgtttctcttccaagcccggacgaggacga |
144 |
Q |
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| T |
790778 |
tctcattttacaggcctgatgtgatggaccccgctctcttacggcctgggaggtttggtaaactgctctatgttcctctcccgagcccagatga------ |
790871 |
T |
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| Q |
145 |
ccgtgttaaaatattgaaaactcttgcaaagggtagacgtattgatgccagcgtggatttgagtctcattgcaagaatggaagattgtgaaaactttagt |
244 |
Q |
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| T |
790872 |
ccgtgttttgatattgaaagctcttgcaaggaataaacatattgattctagtgtagatttgagcgccattggaagaatggatgcatgtgaaaaccttagc |
790971 |
T |
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| Q |
245 |
ggcgcggatcttgctgcattggtatgtttctac |
277 |
Q |
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| T |
790972 |
ggtgctgatcttgctgaattggtatgtttctac |
791004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 7295508 - 7295429
Alignment:
| Q |
188 |
gatgccagcgtggatttgagtctcattgcaagaatggaagattgtgaaaactttagtggcgcggatcttgctgcattggt |
267 |
Q |
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| T |
7295508 |
gatgccagtgtggatttgagcgacattgcaagaatgaaagcttgtaaaaactttaatggtgctgatcttgctgcattggt |
7295429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 7304746 - 7304663
Alignment:
| Q |
184 |
tattgatgccagcgtggatttgagtctcattgcaagaatggaagattgtgaaaactttagtggcgcggatcttgctgcattggt |
267 |
Q |
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| T |
7304746 |
tattgatgccagtgtggatttgagcgccattggaagatcgaaagcctgtgaaaactatagtggtgccgatcttgctgcattggt |
7304663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 7304967 - 7304835
Alignment:
| Q |
3 |
ttagttattttacttcatatcatgttgtgcattcaatcaatttctcgttttgcaggcctgaggcgatggaccctgctctcttacgacatggtagatttgg |
102 |
Q |
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| T |
7304967 |
ttagttattttacttcacatcatattgt--attcactcaattcctcattttacaggcctttggagatggacaaagctgtcctacgtccgggtagatttgg |
7304870 |
T |
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| Q |
103 |
taaacttcattatgtttctcttccaagcccggacg |
137 |
Q |
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| T |
7304869 |
taatcatatttatatttctcttccaagcccagacg |
7304835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 7295710 - 7295606
Alignment:
| Q |
34 |
ttcaatcaatttctcgttttgcaggcctgaggcgatggaccctgctctcttacgacatggtagatttggtaaacttcattatgtttctcttccaagcccg |
133 |
Q |
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| T |
7295710 |
ttcactcaatttttcgttttccaggcctgaggtgatggacagtgctctcctaaggctgggtagatttggtaatcttattcatatccctcttccaagccca |
7295611 |
T |
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| Q |
134 |
gacga |
138 |
Q |
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||||| |
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| T |
7295610 |
gacga |
7295606 |
T |
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