View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14012_low_4 (Length: 311)
Name: NF14012_low_4
Description: NF14012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14012_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 31863707 - 31863793
Alignment:
| Q |
8 |
gaatatggtgattgtaaaagaatgccatatgaagtagattggatctattagataacgattatactctacaagtttaaattattaagt |
94 |
Q |
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| T |
31863707 |
gaatgtggtgattgtaaaagaatgccatatgaagtagattggatctattagataacgattatactctacaagttaaagttattaagt |
31863793 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 31863868 - 31863943
Alignment:
| Q |
169 |
catgaaaaatatgaatgattgtctcaacaaatcctccataggaagaaggatgtgataagtcaaagtctgaagtcag |
244 |
Q |
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| T |
31863868 |
catgaaaaatatgaatgattgtctcaacaaatcctccagaggaagaagggtgtgataagtcaaagtctgaagtcag |
31863943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 31929865 - 31929951
Alignment:
| Q |
8 |
gaatatggtgattgtaaaagaatgccatatgaagtagattggatctattagataacgattatactctacaagtttaaattattaagt |
94 |
Q |
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| T |
31929865 |
gaatgtggtgattgtaaaaaaacgccatatgaagtaggttggatctataagataatgatgatactctacaaatttaatttattaagt |
31929951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 31897921 - 31898007
Alignment:
| Q |
8 |
gaatatggtgattgtaaaagaatgccatatgaagtagattggatctattagataacgattatactctacaagtttaaattattaagt |
94 |
Q |
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| T |
31897921 |
gaatgtggtgattgtaaaagaacgccgtatgaagtaggttggatctataagataatgatgactctctacaagtttaatttattaagt |
31898007 |
T |
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