View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14013_high_1 (Length: 450)
Name: NF14013_high_1
Description: NF14013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14013_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 12800126 - 12799700
Alignment:
| Q |
19 |
aaggtatggaagcaaggaggataatgtgaattgcaaatgatgaaacaatggttatggtttttctcattttttgaggagtggaagtgaagggtatggtgtg |
118 |
Q |
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| T |
12800126 |
aaggtatggaagcaaggaggataatgtgaattgcaaatgatgaaacaatggttatggtttttctcattttttgaggagtggaagtgaagggtatggagtg |
12800027 |
T |
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| Q |
119 |
gaatttgagaaatgagaagtgtgagaaatgggaaatgagaatgagaa------ggtgatttctttggcttctatttaaggttagttttagtggttgagtg |
212 |
Q |
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| T |
12800026 |
gaatttgagaaatgagaagtg--agaaatgggaaatgagaatgagaatgagaaggtgatttctttggcttctatttaaggttagttttagtggttgagtg |
12799929 |
T |
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| Q |
213 |
agttaacaaattgttggacatagttttgttttcttttagtttaatataataggatttaaatcttcttgatgtgaaaaatatttgagtattaagtggataa |
312 |
Q |
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| T |
12799928 |
agttaacaaattgttggacatagttttgttttcttttagtttaatataataggatttaaatcttcttgatgtgaaaaatatttgagtattaagtggataa |
12799829 |
T |
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| Q |
313 |
tttcaccattaaaatatattaggttctataatttataaaagttgaatttttcgtttgagtccaactgacagtttatagggttaataattgtggaaaatcg |
412 |
Q |
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| T |
12799828 |
tttcaccattaaaatatattaggttctataatttataaaagttgaattttccgttcgagtccaactaacagtttgtaggattaatagttgtgggaaatcg |
12799729 |
T |
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| Q |
413 |
tctttgtctcgtacatgatattcttcgac |
441 |
Q |
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| T |
12799728 |
tctttgtcttgtacatgatactattcgac |
12799700 |
T |
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