View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14013_high_2 (Length: 446)
Name: NF14013_high_2
Description: NF14013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14013_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 48825583 - 48826011
Alignment:
| Q |
13 |
gaacagtgtgagtagtagccctgggaagaata--caaaaataagaaactgaagcaaaacaattaaaatgttgaaggagggtgatatagcatacatacata |
110 |
Q |
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| T |
48825583 |
gaacagtgtgagtagtagccctgggaagaatatacagaaataagaaactgaagcaaaacaattaaa--------ggagggtgatatagcatacatacata |
48825674 |
T |
|
| Q |
111 |
cacaacaacaaggaaagcaacatgagg---------ttgagatagaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggttta |
201 |
Q |
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| T |
48825675 |
cacaacaacaaggaaagcaacatgagaaagatgagcttgagatagaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggttta |
48825774 |
T |
|
| Q |
202 |
ccatatagtttttctaagttggagaggccgtttgaagagaggccgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatga |
301 |
Q |
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| T |
48825775 |
ccatatagtttttctaagttggagaggccttttgaagagaggccgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatt----tatga |
48825870 |
T |
|
| Q |
302 |
atagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcctaaaccaattatatgtataacatt--------------tcaaatcaaatgaat |
387 |
Q |
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| T |
48825871 |
atagcttgtaaacctttgagagtgatatcttgctcgttgcccaatcctaaaccaat--tatgtataacatttttctactgaactatcaaatcaaatgaat |
48825968 |
T |
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| Q |
388 |
tgcaatggagaagaagagcttactgtcgcagcgcagagagaga |
430 |
Q |
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| T |
48825969 |
tgcaatggagaagaagagcttactgtcgcagcgcagagagaga |
48826011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 145 - 373
Target Start/End: Original strand, 53054117 - 53054339
Alignment:
| Q |
145 |
agaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggtttaccatatagtttttctaagttggagaggccgtttgaagagaggc |
244 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| | |||||||||||||| ||||||||| | |
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| T |
53054117 |
agaatatcatccgctttttcttcaaccatttctctatcggcaagaataatgggtttaccgtatagtttttcgaggttggagaggccgtgtgaagagagac |
53054216 |
T |
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| Q |
245 |
cgaaggagaggagggaagtgtaagcttccatgtaaactttgtcgcatttatatatgaatagcttgtaaacctttgagagtgatatcttgctcgttgccca |
344 |
Q |
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| T |
53054217 |
cgaaggagagaagggaagtgtaagcttccatgtaaaccttgtcgcatt----tttgaatagcttctaaacctttgagtgtaatatcttgctcatcgccca |
53054312 |
T |
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| Q |
345 |
atcctaaaccaattatatgtataacattt |
373 |
Q |
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| T |
53054313 |
accctaaaccgat--tatgtataacattt |
53054339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 53341427 - 53341292
Alignment:
| Q |
145 |
agaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggtttaccatatagtttttctaagttggagaggccgtttgaagagaggc |
244 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||||||| | |
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| T |
53341427 |
agaatatcatccgctttttcttcaaccatttctctatcggcaagtgtaatgggtttaccgtatagtttttcaaggttggagaggccgtatgaagagagac |
53341328 |
T |
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| Q |
245 |
cgaaggagaggagggaagtgtaagcttccatgtaaa |
280 |
Q |
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|||||||| | ||||||||||||||||||||||||| |
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| T |
53341327 |
cgaaggagggaagggaagtgtaagcttccatgtaaa |
53341292 |
T |
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