View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14013_high_3 (Length: 439)
Name: NF14013_high_3
Description: NF14013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14013_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 34636567 - 34636979
Alignment:
| Q |
20 |
acaccttcgatgtgagataggggtgtaagttgttaattaaccatggtcacattcttaaccaaggttgtttaacctagctattcactttccaagaccnnnn |
119 |
Q |
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| T |
34636567 |
acaccttcgatgtgagataggggtgtaagttgttaattaaccatggtcatattcttaaccaaggttgtttaacctagctattcactttccaagacctgta |
34636666 |
T |
|
| Q |
120 |
nnnnnnnnaccgttgatccccacatggtgtatatatagcctcatgacacacgtcctttaaccatcaattccacttcctcttccaaaaacttccctaaaca |
219 |
Q |
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| T |
34636667 |
tgtaca--accgttgatccccacatggtgtatatatagcctcatgacacacgtcctttaaccatcaattccacttcttcttccaaaaacttccctaaaca |
34636764 |
T |
|
| Q |
220 |
tgaaacccacactaacattcctttggctcctaatcacaacacttgtctatcatgttcttagatcaatatttctaaccaccttctattggcctctaataat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636765 |
tgaaacccacactaacattcctttggctcctaatcacaacacttgtctatcatgttctaagatcaatatttctaaccaccttctattggcctctaataat |
34636864 |
T |
|
| Q |
320 |
taatactctctttatctccaccctcctcactatttctctaattaattactggcttgtccctggaggctttgcatggaggaactataaacaaagcacaaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34636865 |
taatactctctttatctccaccctcctcactatttctctaattaattactggcttgtccctggaggctttgcatggaggaactataaacaaagcacaaaa |
34636964 |
T |
|
| Q |
420 |
ctcattgggcctatg |
434 |
Q |
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| T |
34636965 |
ctcattgggcctatg |
34636979 |
T |
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