View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14013_low_5 (Length: 355)

Name: NF14013_low_5

Description: NF14013

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14013_low_5

[»] chr8 (6 HSPs)

Alignment Details

Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 223; E-Value: 1e-123

Query Start/End: Original strand, 18 - 355

Target Start/End: Complemental strand, 37281287 - 37280949

Alignment:

Q	18	gtttctccacaattcagcaatctcaacaatttatatagtgttgtatatggtgattatgtaaaattgaacaccaattattatgacaaacacattacataac	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37281287	gtttctccacaagtcagcaatctcaacaatttatatagtgttgtatatggtgattatgtaaaattgaacaacaattattatgacaaacacattacataac	37281188	T

Q	118	tcctctcaaaatgacaaacaacaacacatttcatataatgagttgtcagtctgtttcaaaatcagactttggtgtatgtaatgattacattacatatccc	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37281187	tcctctcaaaatgacaaacaacaacacatttcatataatgagttgttagtctgtttcaaaatcagactttggtgtatgtaatgattacattacatatccc	37281088	T

Q	218	ctnnnnnnnnttacgagtgatcaggacaaagttatg-aatacataactaagtagtgatcatacnnnnnnnnnnnnnnnnnnnnnnnnatcaaaagtagaa	316	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	37281087	ctaaaaaaaattacgagtgatcaggacaaagttatgaaatacataactaagtagtgatcatacatatatatgatgatattatatataatcaaaagtagaa	37280988	T

Q	317	gaagccagcgactgcagcagttgcagctgttcctgcgac	355	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37280987	gaagccagcgactgcagcagttgcagctgttcctgcgac	37280949	T

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Target: chr8; HSP #2

Raw Score: 44; E-Value: 5e-16

Query Start/End: Original strand, 304 - 355

Target Start/End: Complemental strand, 37261425 - 37261374

Alignment:

Q	304	atcaaaagtagaagaagccagcgactgcagcagttgcagctgttcctgcgac	355	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	37261425	atcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcgac	37261374	T

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Target: chr8; HSP #3

Raw Score: 43; E-Value: 0.000000000000002

Query Start/End: Original strand, 304 - 354

Target Start/End: Complemental strand, 37265198 - 37265148

Alignment:

Q	304	atcaaaagtagaagaagccagcgactgcagcagttgcagctgttcctgcga	354	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	37265198	atcaaaagtagaagaagccagcgattgcagcagttgcagccgttcctgcga	37265148	T

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Target: chr8; HSP #4

Raw Score: 35; E-Value: 0.0000000001

Query Start/End: Original strand, 304 - 354

Target Start/End: Complemental strand, 37277166 - 37277116

Alignment:

Q	304	atcaaaagtagaagaagccagcgactgcagcagttgcagctgttcctgcga	354	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	37277166	atcaaaagtagaagaagccagcgattgaagcagttacaactgttcctgcga	37277116	T

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Target: chr8; HSP #5

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 230 - 277

Target Start/End: Complemental strand, 37277241 - 37277193

Alignment:

Q	230	acgagtgatcaggacaaagttatgaa-tacataactaagtagtgatcat	277	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37277241	acgagtgatcaagacaaagttaagaaatacataactaagtagtgatcat	37277193	T

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Target: chr8; HSP #6

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 76 - 109

Target Start/End: Complemental strand, 37277332 - 37277299

Alignment:

Q	76	taaaattgaacaccaattattatgacaaacacat	109	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37277332	taaaattgaacaacaattattatgacaaacacat	37277299	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]