View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_10 (Length: 390)
Name: NF14014_high_10
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 5794174 - 5794495
Alignment:
| Q |
13 |
aatatgttgacaacatccaaaatgattatagaataaaccccaaccatattcaattaatagaagattttagacatcagctatatgcacacatgaaagtagt |
112 |
Q |
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| T |
5794174 |
aatatgttgacaacatccaaaatgattatagaataaaccccaaccatattcaattaatagaagattttagacatcagctatatgcacacatgaaagtagt |
5794273 |
T |
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| Q |
113 |
aaccaaaataggcaactgaaataaggaatggaagaaaaggttgaattaattatcaacaattatgcaggtagaatatcgagttgcccattaagaacaggtg |
212 |
Q |
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| T |
5794274 |
aaccaaaataggcaactgaaataaggaatggaagaaaaggttgaattaattatcaacaattatgcaggtagaatatcgagttgcccattaagaacaggtg |
5794373 |
T |
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| Q |
213 |
ggtttcccacttgttgtcccaaaagtttcagagcagtgcatgcgtatgtcgggaaagataataggaaactgttgatgtctaaatacagcattagatcaac |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5794374 |
ggtttcc--cttgttgtcccaaaagtttcagagcagtgcatgcatatgtcgggaaagataataggaaactgttgatgtctaaatacagcattagatcaac |
5794471 |
T |
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| Q |
313 |
aaagcaaagataaataactacatt |
336 |
Q |
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|||||||||| ||| ||||||||| |
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| T |
5794472 |
aaagcaaagacaaacaactacatt |
5794495 |
T |
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