View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_13 (Length: 314)
Name: NF14014_high_13
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 51351175 - 51351472
Alignment:
| Q |
1 |
ctatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgctgttgggttagtgttagattttttgaataggcaaatgttagtaa |
100 |
Q |
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| T |
51351175 |
ctatgggaagtgattttgtgtctgttaaatgcgattttagcaattctgttgtctgctgttgggttagtgttagattttttgaataggcaaatgttagtaa |
51351274 |
T |
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| Q |
101 |
ttagtttgttaggaggaaggtgaaacattaacagaaaattgattgaacttggacgtagctcattctttgtccgaatctaaattattggactattccgaac |
200 |
Q |
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| T |
51351275 |
ttagtttgttaggaggaaggtgaaacgttaacagaaaattgattgaacttagacgtagctcattctttgtccgaatctaaatta---------------- |
51351358 |
T |
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| Q |
201 |
ttcggagactttgcccagttagtgttaaataaaattgattttagcttcaaactatgctttaattaaatgtttggtnnnnnnntaatttacactaaaattt |
300 |
Q |
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| T |
51351359 |
ttcggagactttgcccaggtagtgttagataaaattgattttagcttcaaactatgctttaattaaatgtttggtaaaaaaataatttacactaaaattt |
51351458 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 12038052 - 12038084
Alignment:
| Q |
83 |
ataggcaaatgttagtaattagtttgttaggag |
115 |
Q |
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| T |
12038052 |
ataggcaaatgttagtagttagtttgttaggag |
12038084 |
T |
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