View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_16 (Length: 258)
Name: NF14014_high_16
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 29448949 - 29449171
Alignment:
| Q |
19 |
agaggtgctttcaagaagcaactgtaagacctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaaatctaatacaaga |
118 |
Q |
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| T |
29448949 |
agaggtgctttcaagaagcaaatgtaagacctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaaatctaatacaaga |
29449048 |
T |
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| Q |
119 |
aactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgcccnnnnnnnnaatcatgtcttgaatattttttctaca |
218 |
Q |
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| T |
29449049 |
aactacacttcacaaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaacgccc-tttttttaatcatgtcttgaatattttttctaca |
29449147 |
T |
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| Q |
219 |
aattaagttttatgttgtaatatc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
29449148 |
aattaagttttatgttgtaatatc |
29449171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 29456900 - 29456979
Alignment:
| Q |
19 |
agaggtgctttcaagaagcaactgtaagacctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtact |
98 |
Q |
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| T |
29456900 |
agaggtgctttcaagaagcacaggtaagaccatttttaaagaattaatctcaacttccattttaaagaagcaaaggtact |
29456979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 29456984 - 29457031
Alignment:
| Q |
132 |
aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac |
179 |
Q |
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|||| |||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
29456984 |
aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac |
29457031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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