View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_17 (Length: 258)
Name: NF14014_high_17
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 8066288 - 8066526
Alignment:
| Q |
6 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
105 |
Q |
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| T |
8066288 |
gtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctca |
8066387 |
T |
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| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
205 |
Q |
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| T |
8066388 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
8066487 |
T |
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| Q |
206 |
aatcccataatgtagtatcgaagattgtgagatcctcct |
244 |
Q |
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| T |
8066488 |
aatcccataatgtagtatcgaagattgtgagatcctcct |
8066526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 8074723 - 8074960
Alignment:
| Q |
6 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
105 |
Q |
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| T |
8074723 |
gtcgaacactatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctca |
8074822 |
T |
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| Q |
106 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
205 |
Q |
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| T |
8074823 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaataacttggaatgagtcggattttgtaaaatta |
8074922 |
T |
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| Q |
206 |
aatcccataatgtagtatcgaagattgtgagatcctcc |
243 |
Q |
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| T |
8074923 |
aatcccataatggagtctcaaagattgtgaggtcctcc |
8074960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 34951317 - 34951375
Alignment:
| Q |
31 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
89 |
Q |
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| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34951375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 34946846 - 34946904
Alignment:
| Q |
31 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
89 |
Q |
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| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34946904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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