View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_20 (Length: 240)
Name: NF14014_high_20
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 36653177 - 36652955
Alignment:
| Q |
20 |
ttgctcggttagagatacttgtttttatgcataatattgtgaaacgtttcaaatgggatttagttaatcctgatgagaagttcaagtatgatcctatgct |
119 |
Q |
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| T |
36653177 |
ttgctcggttagagatacttgtttttatgcataatattgtgaaacgtttcaaatgggatttagttaatcctgatgagaagttcaagtatgatcctatgct |
36653078 |
T |
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| Q |
120 |
agagcctgaaaatggacttccaatccaacttcaaccttcccaatacacatcataata--ataaattgataagaagctttatatatgaagttttcatcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36653077 |
agagcctgaaaatggacttccaatccaacttcaaccttcccaatacacatggtaataatataaattgataagaagctttatatatgaagttttcatcttc |
36652978 |
T |
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| Q |
218 |
ttatatggtattaaaatgttatt |
240 |
Q |
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| T |
36652977 |
ttatatggtattaaaatgttatt |
36652955 |
T |
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