View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_22 (Length: 236)
Name: NF14014_high_22
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 42890075 - 42890296
Alignment:
| Q |
15 |
acttatcccctctattgaaaccctatttgtcaacgctaagcttaaacaatgtccctcatttaattaatccnnnnnnntttacgttcattttatttgttac |
114 |
Q |
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| T |
42890075 |
acttatcccctctattaaaaccctatttgtcaacactaagcttaaacaatgtccctcatttaattaatccaaaaaaaattacgttcattttatttgttac |
42890174 |
T |
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| Q |
115 |
cccatcgaaacttgttaatcatgctttcactatactcacataaactgatagcaagtagataaaaggtgccagaatttgtgctttctttattctattcttt |
214 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890175 |
cccaccgaaacttgttaatcatgctttcacgatactcacataaactgatagcaagtagataaaaggtgccagaatttgtgctttctttattctattcttt |
42890274 |
T |
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| Q |
215 |
tgttggaatcttcaatcctcac |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
42890275 |
tgttggaatcttcaatcctcac |
42890296 |
T |
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