View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_27 (Length: 201)
Name: NF14014_high_27
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2818795 - 2818613
Alignment:
| Q |
1 |
tatattatgcattgtctttaccaaattagataagctcatgaggacaacgaatttgaatacctcgtataatttgagttgagttgaattgaataaattttgc |
100 |
Q |
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||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
2818795 |
tatattatgcattgtctctatcaagttagataagctcatgaggacaacgaatttgattatctcgtataatttgagttgagttgaattgaataaattttgc |
2818696 |
T |
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| Q |
101 |
ttataaaaaatttcaaagagaagcattgttacctaaagtagtagcacttgaacaactctcactccaactaacatcaatatttag |
184 |
Q |
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| T |
2818695 |
ttataaaaaaattc-aagagaaacattgttacctaaagtagtagcacttgaacaactctcactccaactaacatcaatatttag |
2818613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 39590854 - 39590884
Alignment:
| Q |
81 |
ttgaattgaataaattttgcttataaaaaat |
111 |
Q |
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| T |
39590854 |
ttgaattgaataaattttgcttataaaaaat |
39590884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37930082 - 37930036
Alignment:
| Q |
1 |
tatattatgcattgtctttaccaaattagataagctcatgaggacaa |
47 |
Q |
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| T |
37930082 |
tatattatgcattgtccttaccaactgagataagctcacgaggacaa |
37930036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7922273 - 7922319
Alignment:
| Q |
1 |
tatattatgcattgtctttaccaaattagataagctcatgaggacaa |
47 |
Q |
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|||||||||||||||||||||||| | ||||||||||| | |||||| |
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| T |
7922273 |
tatattatgcattgtctttaccaactgagataagctcacgtggacaa |
7922319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 788904 - 788859
Alignment:
| Q |
1 |
tatattatgcattgtctttaccaaattagataagctcatgaggaca |
46 |
Q |
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|||||||||||||||| ||||||| | ||||||||||| ||||||| |
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| T |
788904 |
tatattatgcattgtccttaccaactgagataagctcacgaggaca |
788859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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