View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_high_5 (Length: 467)
Name: NF14014_high_5
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Complemental strand, 37536948 - 37536511
Alignment:
| Q |
15 |
attcttatgaatgatgatttgttaaatatatgggagatgtgcaggtcaatcactttgaggcttttctagttccctaatggtgcacacctaattcatgtat |
114 |
Q |
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| T |
37536948 |
attcttatgaatgatgatttgttaaatatatgggagatgtgcaggtcaatcactttgaggcttttttagttccctaatggtgcacacctaattcatgtat |
37536849 |
T |
|
| Q |
115 |
gcaactaatccatggtgccagaatattaaagtattttcatgctgtcaagaagaaatcttatcttatatagaaaaaacagcaacaatataaaaatggagac |
214 |
Q |
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| T |
37536848 |
gcaactaatccatggtgccagaatattaaagtattttcatgctgtcaagaagaaatcttatcttatatagaaaaaacagcaacaatataaaaatggagac |
37536749 |
T |
|
| Q |
215 |
gaaactgttattatttattctagcaacactctc--tctaacacttattttttcactgaatgaaattaatgtggatcataaactttggaaatgaatctcgc |
312 |
Q |
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| T |
37536748 |
gaaactgttattatttattctagcaacactctctttctaacacttatttttttactgaatgaaattaatgtggatcataaactttggaaatgaatctcgc |
37536649 |
T |
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| Q |
313 |
ttaaagtgatgtgtgatccacattgatttcatccgccatccgatgaaagattgagtgttaaaagatattaaaaagtgagtttatatccatggttttatat |
412 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
37536648 |
ttaaagtgatgtgtaatccacattgatttcatccgtcatccggtgaaagattgagtgttaaaagatattaaaaagtgaatttatatccacggttttatat |
37536549 |
T |
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| Q |
413 |
ttttatggcatctccatctttaaatctatgatggtctt |
450 |
Q |
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| T |
37536548 |
tcttatggcatctccatctttaaatatatgatggtctt |
37536511 |
T |
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