View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14014_high_7 (Length: 436)

Name: NF14014_high_7
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14014_high_7
NF14014_high_7
[»] chr6 (4 HSPs)
chr6 (156-420)||(26216222-26216486)
chr6 (1-81)||(26216067-26216147)
chr6 (1-49)||(3880631-3880680)
chr6 (1-48)||(26534767-26534815)
[»] chr8 (2 HSPs)
chr8 (1-61)||(32945751-32945812)
chr8 (1-70)||(30236176-30236246)
[»] chr7 (3 HSPs)
chr7 (1-69)||(6584873-6584942)
chr7 (1-70)||(38485519-38485589)
chr7 (1-46)||(44755613-44755659)
[»] chr1 (4 HSPs)
chr1 (1-59)||(46814515-46814574)
chr1 (1-46)||(7857640-7857686)
chr1 (1-46)||(17033573-17033619)
chr1 (1-46)||(24684526-24684572)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-46)||(19370-19416)
[»] chr4 (2 HSPs)
chr4 (1-46)||(31050710-31050756)
chr4 (1-46)||(19311390-19311435)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 156 - 420
Target Start/End: Original strand, 26216222 - 26216486
Alignment:
Q  156 agctagcgacaactagaccatatattccttaaggaccaacaaattagggaagaattttttaaagtcgtcacaaccaaagactaatcattctccaaccaaa 255  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26216222 agctagcgacaactagaccatgtattccttaaggaccaacaaattagggaagaattttttaaagtcgtcacaaccaaagattaatcattctccaaccaaa 26216321  T
Q  256 ggtttggccaattattttgacgatccatctcaattgctctcatcacaccagatagatagctctgccatgcaagctgatccctgagcaagattattatcaa 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26216322 ggtttggccaattattttgacgatccatctcaattgctctcatcacaccagatagatagctctgccatgcaagctgatccctgagcaagattattatcaa 26216421  T
Q  356 agatgagcattgctatcagtaaatatgcctccacaggataatgatacattggtggctgcaacatc 420  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  26216422 agatgagcattgctatcaggaaagatgcctccacaggataatgatacattggtggctgcaacatc 26216486  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26216067 - 26216147
Alignment:
Q  1 aaaagtgatcggcccaccagacttagaatcaaatcagaagggcacctcttacctccggtccgccatagaattacggtggag 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  26216067 aaaagtgatcggcccaccagacttagaatcaaatcagaagggcacctcttacctccggtccatcatagaattacggtggag 26216147  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3880631 - 3880680
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacctct 49  Q
    ||||||||||||||||||| || |||| | ||||||||||||||||||||    
T  3880631 aaaagtgatcggcccaccaaactttaggaccaaatcagaagggcacctct 3880680  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26534767 - 26534815
Alignment:
Q  1 aaaagtgatcggcccaccagactt-agaatcaaatcagaagggcacctc 48  Q
    |||||||||||||||||||||||| || | |||||||||||| ||||||    
T  26534767 aaaagtgatcggcccaccagacttcaggaccaaatcagaaggccacctc 26534815  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32945751 - 32945812
Alignment:
Q  1 aaaagtgatcggcccaccagactt-agaatcaaatcagaagggcacctcttacctccggtcc 61  Q
    |||||||||| |||||| | |||| |||||||||||||||| ||||||||||||||||||||    
T  32945751 aaaagtgatcagcccactatacttcagaatcaaatcagaagagcacctcttacctccggtcc 32945812  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 30236176 - 30236246
Alignment:
Q  1 aaaagtgatcggcccaccagactt-agaatcaaatcagaagggcacctcttacctccggtccgccatagaa 70  Q
    ||||| ||||| |||||||||||| | || ||||||||||||||||| |||||| ||||||| ||| ||||    
T  30236176 aaaagcgatcgtcccaccagacttcaaaaccaaatcagaagggcaccccttacccccggtccaccagagaa 30236246  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6584942 - 6584873
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacctcttacctccggtccgccataga 69  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||| ||  |||||||| | |||||||    
T  6584942 aaaagtgatcggcccaccagactttagaaccaaatcagcagggcacccctcgcctccggtacaccataga 6584873  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38485589 - 38485519
Alignment:
Q  1 aaaagtgatcggcccaccagactt-agaatcaaatcagaagggcacctcttacctccggtccgccatagaa 70  Q
    |||||||||||||||||||||||| ||||  || ||||||||||||| |||||| || |||| ||| ||||    
T  38485589 aaaagtgatcggcccaccagacttcagaacaaattcagaagggcaccccttacccccagtccaccagagaa 38485519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44755659 - 44755613
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacc 46  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||    
T  44755659 aaaagtgatcggcccaccagactttaggaccaaatcagaagggcacc 44755613  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46814515 - 46814574
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacctcttacctccggt 59  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||| ||| || |||||    
T  46814515 aaaagtgatcggcccaccagactttagaaccaaatcagcagggcaccccttgcccccggt 46814574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7857686 - 7857640
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacc 46  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  7857686 aaaagtgatcggcccaccagactttagaaccaaatcagcagggcacc 7857640  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17033619 - 17033573
Alignment:
Q  1 aaaagtgatcggcccaccagact-tagaatcaaatcagaagggcacc 46  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||    
T  17033619 aaaagtgatcggcccaccagactataggaccaaatcagaagggcacc 17033573  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24684526 - 24684572
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacc 46  Q
    |||||||||||||||||||||| |||||||||||| || ||||||||    
T  24684526 aaaagtgatcggcccaccagactttagaatcaaattagtagggcacc 24684572  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19416 - 19370
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacc 46  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||    
T  19416 aaaagtgatcggcccaccagactttaggaccaaatcagaagggcacc 19370  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31050710 - 31050756
Alignment:
Q  1 aaaagtgatcggcccaccagac-ttagaatcaaatcagaagggcacc 46  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||    
T  31050710 aaaagtgatcggcccaccagactttagaaccaaatcagtagggcacc 31050756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19311390 - 19311435
Alignment:
Q  1 aaaagtgatcggcccaccagacttagaatcaaatcagaagggcacc 46  Q
    ||||||||||| ||||||||||||| || |||||||||||| ||||    
T  19311390 aaaagtgatcgacccaccagacttaaaaccaaatcagaaggacacc 19311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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