View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14014_low_1 (Length: 578)

Name: NF14014_low_1
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14014_low_1
NF14014_low_1
[»] chr3 (5 HSPs)
chr3 (1-572)||(10298987-10299558)
chr3 (1-572)||(10319419-10319990)
chr3 (1-572)||(10336534-10337106)
chr3 (302-418)||(10338441-10338557)
chr3 (508-572)||(10338355-10338419)
[»] chr7 (5 HSPs)
chr7 (93-572)||(35629386-35629858)
chr7 (179-572)||(35632616-35633012)
chr7 (263-559)||(35635959-35636261)
chr7 (1-138)||(35632459-35632596)
chr7 (94-193)||(35635807-35635906)


Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 10299558 - 10298987
Alignment:
Q  1 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299558 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 10299459  T
Q  101 cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299458 cggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 10299359  T
Q  201 atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10299358 atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat 10299259  T
Q  301 agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299258 agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 10299159  T
Q  401 tatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299158 tatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 10299059  T
Q  501 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299058 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 10298987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 10319990 - 10319419
Alignment:
Q  1 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10319990 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 10319891  T
Q  101 cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10319890 cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 10319791  T
Q  201 atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10319790 atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat 10319691  T
Q  301 agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10319690 agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 10319591  T
Q  401 tatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 500  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10319590 gatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 10319491  T
Q  501 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10319490 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 10319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 10337106 - 10336534
Alignment:
Q  1 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10337106 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 10337007  T
Q  101 cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10337006 cggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaattgtcgtca 10336907  T
Q  201 atcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaaagaacaagttat 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10336906 atcaaaaaacacgaagacttattttcattttctaaaggctaaataagtcttcgtgtttcttctcaatgtgaatggaaaaatcaagaaaagaacaagttat 10336807  T
Q  301 agatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10336806 agatatatacatacatttctaggattctttcgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaact 10336707  T
Q  401 tatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 500  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10336706 gatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatttccaatttggggaatgattc 10336607  T
Q  501 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacct-aatcaatatacaagaa 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  10336606 gcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctactaacctaaatcaatatacaagaa 10336534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 418
Target Start/End: Complemental strand, 10338557 - 10338441
Alignment:
Q  302 gatatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatcagaagcaaatataataaactt 401  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||   | |||||||||||| |||||||||||| |||| |||||||||  ||||||    
T  10338557 gatatatacatacatttcttggattcttttgaacaatttcaactgctagctcatttgacaagaactcccaaagtccaacagaggcaaatatatgaaactt 10338458  T
Q  402 atcattatctgttaaaa 418  Q
    || | | ||||||||||    
T  10338457 attactctctgttaaaa 10338441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 10338419 - 10338355
Alignment:
Q  508 gtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 572  Q
    |||||||||| | | |||| ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  10338419 gtaaattcaggcattttcaaatatgcatcaccaatagttctactaacctaataaatatacaagaa 10338355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 93 - 572
Target Start/End: Original strand, 35629386 - 35629858
Alignment:
Q  93 cgctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaata--attaaattaaaagcctgcaaatataactgtaaagactcaa 190  Q
    ||||||| | ||||||| ||||||||| ||||||||||||||||||||||| || |||  | ||||| ||||||| ||||| ||||| |||| |||||||    
T  35629386 cgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatataactaaatcaaaagccagcaaacataacggtaatgactcaa 35629485  T
Q  191 att-gtcgtcaat-caaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaaaaatcaagaaa 288  Q
    ||| ||| |  || |||||||||| || ||||||||||||||| ||||| | ||||                   ||| ||||| ||||||| |||||||    
T  35629486 attcgtctttgatgcaaaaaacacaaatacttattttcattttataaagactaaat-------------------caaaatgaaaggaaaaaccaagaaa 35629566  T
Q  289 agaacaagttataga--------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatcccaaagtccatc 380  Q
    |||| |||| |||||        ||||||| ||||||||| ||||| ||||||||||||||| | |||| || |||||||||||||||||||||||||||    
T  35629567 agaaaaagtcatagaaatcgatatatatacttacatttcttggattgttttgaacaatttcaactgcttgttcatttgacaagaaatcccaaagtccatc 35629666  T
Q  381 agaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttccggaactatt 480  Q
    |||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |||||| ||    
T  35629667 agaagcaaatataagaaacttgtcactatatgttaaaactctagtacgcatctctggttctgctgataccacacctctagtaaatggttcaggaactttt 35629766  T
Q  481 tccaatttggggaatgattcgcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaagaa 572  Q
    |  |||||||| || ||||||| ||  |||||||||  ||| |||||||||| ||||||||||  |||||| ||||||| ||||||||||||    
T  35629767 ttgaatttgggaaacgattcgcacagcgtaaattcaagccttttcagatatgtatcaccaatacttctactaacctaataaatatacaagaa 35629858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 179 - 572
Target Start/End: Original strand, 35632616 - 35633012
Alignment:
Q  179 gtaaagactcaaatt-gtcgtcaatcaaaaaacacgaagacttattttcattttctaaaggccaaataagtcttcgtgtttcttctcaatatgaatggaa 277  Q
    ||||||||||||||| ||| || || |||||||||  ||| ||||||||||||||| ||| | ||| ||| |  ||||||| ||| |||||  || ||||    
T  35632616 gtaaagactcaaattcgtcatcgataaaaaaacac--agaattattttcattttcttaagactaaacaagcc--cgtgttttttcacaatacaaaaggaa 35632711  T
Q  278 aaatcaagaaaagaacaagttatagata------tatacatacatttctaggattcttttgaacaatttcagcagcttttttatttgacaagaaatccca 371  Q
    ||| |||||||||||||||| |||||||      ||||||||||||||| ||||||||||||||||||||||| ||||  | |||||||||||| |||||    
T  35632712 aaaccaagaaaagaacaagtcatagatatggatatatacatacatttcttggattcttttgaacaatttcagctgcttgctcatttgacaagaactccca 35632811  T
Q  372 aagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacctcttgtaaagggttcc 471  Q
    ||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||| |||||| | ||||      
T  35632812 aagtccaacagacgcaaatataagaaacttatcattctctgttaaaactctagtaaacatctctggttctgctgatggcacaccacttgtacaaggttta 35632911  T
Q  472 ggaactatttccaatttggggaatgattcgcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacctaatcaatatacaaga 571  Q
    |||||| |||  |||||||| || || ||| | |   ||||||||| ||| |||| ||||||||||||||||| |||||| |||| || |||||||||||    
T  35632912 ggaacttttttaaatttgggaaacgactcgtgaagcataaattcaggccttttcaaatatgcatcaccaatagttctactgacctgataaatatacaaga 35633011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 263 - 559
Target Start/End: Original strand, 35635959 - 35636261
Alignment:
Q  263 tcaatatgaatggaaaaatcaagaaaagaacaagttataga------tatatacatacatttctaggattcttttgaacaatttcagcagcttttttatt 356  Q
    |||| ||||| |||||||| |||||||||| |||| |||||      |||| ||||| |||||| | ||| ||||||||||||||| | |||| || |||    
T  35635959 tcaaaatgaaaggaaaaataaagaaaagaaaaagtcatagaaatcgatatacacatatatttcttgaattgttttgaacaatttcaactgcttgttcatt 35636058  T
Q  357 tgacaagaaatcccaaagtccatcagaagcaaatataataaacttatcattatctgttaaaactctagtatgcatctctggttctgctgatagcacacct 456  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||||| |||||| | ||||||| || |||||||||| ||| |||    
T  35636059 tgacaagaaatcccaaagtccatcagaagcaaatatcagaaacttatcgttctctgttaaatctctagaacgcatctccggctctgctgataacacgcct 35636158  T
Q  457 cttgtaaagggttccggaactatttccaatttggggaatgattcgcgcaaagtaaattcagacctcttcagatatgcatcaccaatagctctacttacct 556  Q
    ||  |||| ||||| || |||  ||| || |||||||| ||||||  |||| ||||||||| |||||||| ||||| ||||||||||  |||||| ||||    
T  35636159 ctaataaatggttcaggcacttcttcaaacttggggaacgattcgtccaaactaaattcaggcctcttcaaatatgtatcaccaatacttctactaacct 35636258  T
Q  557 aat 559  Q
    |||    
T  35636259 aat 35636261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 35632459 - 35632596
Alignment:
Q  1 tcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatcttcctataggtaaccttccttcttttagcagctaccgctagag 100  Q
    ||||||||||||||||||| ||||| ||||| | |||||  |||||| ||||| || | | |||||||||| || ||||| || |||||| | |||||||    
T  35632459 tcatcatgaaaagacctcctgctcatattgtcgtgtcccagagcagcagcctggatgtccatataggtaacatttcttctgttggcagcttcagctagag 35632558  T
Q  101 cggtactcagaagccttttcgcaattccctgcaaaatc 138  Q
    | | | ||||||||||||| |||| |||||||||||||    
T  35632559 cagaattcagaagcctttttgcaactccctgcaaaatc 35632596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 35635807 - 35635906
Alignment:
Q  94 gctagagcggtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaaagactcaaatt 193  Q
    |||||| | ||||||| ||||||||| ||||||||||| ||||  ||||| || |||| ||||| ||||||| ||||| ||||| |||| ||||||||||    
T  35635807 gctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataactaaatcaaaagccagcaaacataacagtaatgactcaaatt 35635906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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