View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14014_low_11 (Length: 368)

Name: NF14014_low_11
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14014_low_11
NF14014_low_11
[»] chr4 (9 HSPs)
chr4 (7-352)||(8646722-8647050)
chr4 (7-223)||(8611729-8611928)
chr4 (18-221)||(8556933-8557132)
chr4 (121-221)||(8555689-8555789)
chr4 (7-95)||(8594496-8594584)
chr4 (18-93)||(8567113-8567187)
chr4 (146-223)||(8567241-8567318)
chr4 (18-86)||(8555600-8555668)
chr4 (133-196)||(8588926-8588989)
[»] chr5 (1 HSPs)
chr5 (229-329)||(11831180-11831281)
[»] chr8 (1 HSPs)
chr8 (281-351)||(12050558-12050627)
[»] chr6 (1 HSPs)
chr6 (253-318)||(31926033-31926097)
[»] chr3 (1 HSPs)
chr3 (229-310)||(29863160-29863241)
[»] chr7 (1 HSPs)
chr7 (312-348)||(37142313-37142349)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 8646722 - 8647050
Alignment:
Q  7 cgagcagaacctgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgtacctattcaat 106  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  8646722 cgagcaaaacatgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtatctattcaat 8646821  T
Q  107 gttatgagtcgaaaaatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatga 206  Q
    |                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8646822 g-----------------ttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatga 8646904  T
Q  207 tagctccaatccacaataggtttgtatctattcaaaaagtgattaactagattgtaaaatttatatttaaaatgttgattactagtctataattaggcat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8646905 tagctccaatccacaataggtttgtatctattcaaaaagtgattaactagattgtaaaatttatatttaaaatgttgattactagtctataattaggcat 8647004  T
Q  307 tgatccacaatcactaattattaaacaattaacaataacatatatg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8647005 tgatccacaatcactaattattaaacaattaacaataacatatatg 8647050  T

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Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 8611928 - 8611729
Alignment:
Q  7 cgagcagaacctgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgtacctattcaat 106  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  8611928 cgagcaaaacatgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtatgagaaaaacggttcaaaaatagaatgtaactattcaat 8611829  T
Q  107 gttatgagtcgaaaaatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatga 206  Q
    ||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  8611828 gttatgag-----------------tcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgctaatcaaaggtttactatga 8611746  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 8557132 - 8556933
Alignment:
Q  18 tgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgtacctattcaatgttatgagtcg 117  Q
    |||||||||||| |||||||||||| | || |||||||| |||| |||||| ||||||||||||||||||||||||| |  || |||     | |  ||     
T  8557132 tgtgataggcattattttcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaaatagaatgcaa-tactcacaaacaagcctcc 8557034  T
Q  118 aaaaatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatc 217  Q
    ||   ||| ||||||||||||  ||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  8557033 aa---tgtcatgagtcatgtgcctattcaaattcaaaagaaggataaatgagatgagaatgagttttgctaatcaaagatttattgtgatagctccaatc 8556937  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 8555689 - 8555789
Alignment:
Q  121 aatgttatgagtcatgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccac 220  Q
    ||||| ||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  8555689 aatgtcatgagtcatgtgcctattcaaattcaaatgaaggacaaatgagatgagaatgagttttgctaatcaaagggttattgtgatagctccaatccac 8555788  T
Q  221 a 221  Q
    |    
T  8555789 a 8555789  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 8594496 - 8594584
Alignment:
Q  7 cgagcagaacctgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaatgt 95  Q
    |||||| ||| ||||||||||||||||||||||||| | || |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  8594496 cgagcaaaacatgtgataggcatgattttcttgggtgagaaatgagacgtaagggaaagtatgagaaaaacggttcaaaaatagaatgt 8594584  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 8567113 - 8567187
Alignment:
Q  18 tgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaaatagaat 93  Q
    ||||||||||||||||||||| |||||||  ||||  |||||||||||||||||||||||||||||||||||||||    
T  8567113 tgtgataggcatgattttctttggtaatatatgagt-gtgagggaaagtataagaaaaacggttcaaaaatagaat 8567187  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 8567241 - 8567318
Alignment:
Q  146 aaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaaggtttattatgatagctccaatccacaat 223  Q
    ||||| || ||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||| || ||||||||    
T  8567241 aaattaaaaagaaggacaaatgagatgagaatgagttttcctaatcaaagggttattgtgatagcttcagtccacaat 8567318  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 8555600 - 8555668
Alignment:
Q  18 tgtgataggcatgattttcttgggtaataagtgagacgtgagggaaagtataagaaaaacggttcaaaa 86  Q
    ||||||||||||||| ||||||||| | || |||||||| |||| |||||| |||||||||||||||||    
T  8555600 tgtgataggcatgatattcttgggtgagaaatgagacgtaaggggaagtatgagaaaaacggttcaaaa 8555668  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 8588926 - 8588989
Alignment:
Q  133 catgtgtttattcaaattcaatagaaggacaaatgagatgagaatgagttttgttaatcaaagg 196  Q
    |||||| | |||||||||||| ||||| ||| |||||||||| |||||||||| |||| |||||    
T  8588926 catgtgctaattcaaattcaaaagaagaacatatgagatgaggatgagttttggtaataaaagg 8588989  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 11831281 - 11831180
Alignment:
Q  229 tgtatctattcaaaaagtgattaa-ctagattgtaaaatttatatttaaaatgttgattactagtctataattaggcattgatccacaatcactaattat 327  Q
    |||||||| |||||| |||||||| ||||||||| |||  |||| ||||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||||    
T  11831281 tgtatctaatcaaaacgtgattaagctagattgtgaaaaatatacttaaaatgtcgattactagtcgataaatagtcattgattcacaatcactaattat 11831182  T
Q  328 ta 329  Q
    ||    
T  11831181 ta 11831180  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 12050627 - 12050558
Alignment:
Q  281 ttgattactagtctataattaggcattgatccacaatcactaattattaaacaattaacaataacatatat 351  Q
    ||||||||||||| | |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||    
T  12050627 ttgattactagtcgaaaattaggcattgattcacaattagtaattattaaa-aattaacaataacatatat 12050558  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 31926097 - 31926033
Alignment:
Q  253 ctagattgtaaaatttatatttaaaatgttgattactagtctataattaggcattgatccacaatc 318  Q
    |||||||||||||  |||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  31926097 ctagattgtaaaaaatatatttaaaat-ttgattactagtcgataattaggcattgattcacaatc 31926033  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 29863241 - 29863160
Alignment:
Q  229 tgtatctattcaaaaagtgattaa-ctagattgtaaaatttatatttaaaatgttgattactagtctataattaggcattgat 310  Q
    ||||| || ||||||||||||||| |||||||||| || | ||||||||||||||||||| | ||  ||||||||||| ||||    
T  29863241 tgtatataatcaaaaagtgattaagctagattgtagaaat-atatttaaaatgttgattagttgttgataattaggcaatgat 29863160  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 37142313 - 37142349
Alignment:
Q  312 cacaatcactaattattaaacaattaacaataacata 348  Q
    |||| |||||||||||||||||||||||||| |||||    
T  37142313 cacagtcactaattattaaacaattaacaatgacata 37142349  T

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