View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_low_14 (Length: 287)
Name: NF14014_low_14
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 33699242 - 33698982
Alignment:
| Q |
10 |
attattctagaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagttgcagtgcagtgga |
109 |
Q |
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| T |
33699242 |
attattctaaaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagttgcagtgcagtgga |
33699143 |
T |
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| Q |
110 |
gcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattctccttaagctgttct |
209 |
Q |
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| T |
33699142 |
gcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattctccttaagctgttct |
33699043 |
T |
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| Q |
210 |
ctataattgccttccaagttaccaaagacagagaggatcccgacattgaaagagaactgcc |
270 |
Q |
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| T |
33699042 |
ctataattgccttccaagttaccaaagacagagaggatcccgacattgaaagagaactgcc |
33698982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 33658407 - 33658247
Alignment:
| Q |
109 |
agcttaccaaaagagctttggagtatgatgttccgggtatcttatttgggaaagaattgtaacctttctctactatgcagtaattctccttaagctgttc |
208 |
Q |
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||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || |
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| T |
33658407 |
agcttaccaaaagagctttagagtatgcagttccgggtatcctatttgggaaagaattgtagcctttctctactatgttgtaattctccttaagctgctc |
33658308 |
T |
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| Q |
209 |
tctataattgccttccaagttaccaaagacagagaggatcccgacattgaaagagaactgc |
269 |
Q |
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| T |
33658307 |
tctataattgccttccaagttaccaaagacagagaggataccaatattgaaagagaactgc |
33658247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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