View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_low_2 (Length: 539)
Name: NF14014_low_2
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 7414692 - 7414183
Alignment:
| Q |
19 |
tagttaaggtgaagctgggggatttaattactcattatatgattatgatgttggtttgttttttgttgactacatttggaaagggttgggggtatataat |
118 |
Q |
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| T |
7414692 |
tagttaaggtgaagctgggggatttaattactcattatatgattatgatgttggtttgttttttgttgactacatttggaaagggttgggggtatataat |
7414593 |
T |
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| Q |
119 |
catggtatagaagagtgggagataannnnnnncgctttgactttggatgattaatttgtgtatgtgtgattggtttagtttagtttggtgtgtgattttt |
218 |
Q |
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| T |
7414592 |
catggtatagaagagtgggagataatttttttcgctttgactttggatgattaatttgtgtatgtgtgattggtttagtttagtttggtgtgtgattttt |
7414493 |
T |
|
| Q |
219 |
catcaattcataaacttttagttcatgcaaagtgtatcgttgttcttctattaccatctatactaatgaatgttgcaaaagaaattgaaatttttctcag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7414492 |
catcaattcataaacttttagttcatgcaaagtgtatcgttgttcttctattaccatctatactaatgaatgttgcaaaagaaattgaaaattttctcag |
7414393 |
T |
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| Q |
319 |
tgaagtcaaatacaacaacacatacaacatgttaattatattgcaaactctaacatgtttgttttgcattgtgtacgcgcagaagaagaacttgacacga |
418 |
Q |
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| T |
7414392 |
tgaagtcaaatacaacaacacatacaacatgttaattatattgcaaactctaacatgtttgttttgcattgtgtacgcgcagaagaagaacttgacacaa |
7414293 |
T |
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| Q |
419 |
acttagtagctattggccttttgcacaagtaatatctaagttgaagccaatcttggtttttatatttgtgttgatcgattggtaatcataggtgtcccgg |
518 |
Q |
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| T |
7414292 |
acttagtagctattggccttttgcacaagtaatatgtaagttgaagccaatcttggtttttatatttgtgttgatcgattggtaatcataggtgtcccgg |
7414193 |
T |
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| Q |
519 |
gtctgatatt |
528 |
Q |
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|| ||||||| |
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| T |
7414192 |
gtttgatatt |
7414183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 29274936 - 29274989
Alignment:
| Q |
202 |
tttggtgtgtgatttttcatcaattcataaacttttagttcatgcaaagtgtat |
255 |
Q |
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| T |
29274936 |
tttggtgtgtggtttttcatctattaagaaacttttagttcatgcaaagtgtat |
29274989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 55859662 - 55859609
Alignment:
| Q |
202 |
tttggtgtgtgatttttcatcaattcataaacttttagttcatgcaaagtgtat |
255 |
Q |
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| T |
55859662 |
tttggtgtgtggtttttcatctattaagaaacttttagttcatgcaaagtgtat |
55859609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 35203964 - 35204017
Alignment:
| Q |
202 |
tttggtgtgtgatttttcatcaattcataaacttttagttcatgcaaagtgtat |
255 |
Q |
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| T |
35203964 |
tttggtgtgtggtttttcatctattaagaaagttttagttcatgcaaagtgtat |
35204017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 3822367 - 3822414
Alignment:
| Q |
202 |
tttggtgtgtgatttttcatcaattcataaacttttagttcatgcaaa |
249 |
Q |
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| T |
3822367 |
tttggtgtgtggtttttcatctattaagaaacttttagttcatgcaaa |
3822414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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