View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14014_low_21 (Length: 237)

Name: NF14014_low_21
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14014_low_21
NF14014_low_21
[»] chr3 (1 HSPs)
chr3 (107-220)||(15993034-15993146)
[»] chr5 (3 HSPs)
chr5 (108-220)||(6702028-6702140)
chr5 (108-193)||(11298482-11298567)
chr5 (108-193)||(37340320-37340405)
[»] chr1 (2 HSPs)
chr1 (97-216)||(41862753-41862872)
chr1 (108-169)||(51382520-51382581)
[»] chr7 (1 HSPs)
chr7 (108-214)||(30063291-30063397)
[»] chr4 (3 HSPs)
chr4 (108-191)||(2304246-2304329)
chr4 (108-167)||(16030600-16030659)
chr4 (116-216)||(33315847-33315947)
[»] chr6 (4 HSPs)
chr6 (156-220)||(20910836-20910900)
chr6 (156-220)||(20925284-20925348)
chr6 (111-193)||(15298379-15298461)
chr6 (108-165)||(31661154-31661211)
[»] scaffold0192 (1 HSPs)
scaffold0192 (111-215)||(19135-19239)
[»] chr8 (3 HSPs)
chr8 (108-165)||(42319906-42319963)
chr8 (108-161)||(45239372-45239425)
chr8 (108-188)||(34310287-34310367)
[»] chr2 (2 HSPs)
chr2 (108-162)||(6673892-6673946)
chr2 (107-144)||(12444890-12444927)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 15993034 - 15993146
Alignment:
Q  107 tgacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaaca 206  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||||||||||||| | ||||| ||||||||    
T  15993034 tgacccgtgcgccgcacgggtcttatgaaccggaataatt-gatacacaataaaaggaaatatgttggaatggaatttaaaaagtcagaatacataaaca 15993132  T
Q  207 aaatttatcggagt 220  Q
    ||||||||||||||    
T  15993133 aaatttatcggagt 15993146  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 6702140 - 6702028
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaacaa 207  Q
    ||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| || ||| ||    
T  6702140 gacccgtgcaccgcacgggtcttatgagccagaataatttgatacacaataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacacaaataa 6702041  T
Q  208 aatttatcggagt 220  Q
    |||||||||||||    
T  6702040 aatttatcggagt 6702028  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 11298482 - 11298567
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaatta 193  Q
    ||||||||||||| | |||||||||||  ||||| ||||||||||| ||||||| |||||||    ||||||||||||||||||||    
T  11298482 gacccgtgcgccgtatgggtcttatgagctggaacaatttgatacataataaaatgaaatatagaggaatggaatttaaaaaatta 11298567  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 37340405 - 37340320
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaatta 193  Q
    ||||||||| ||||||||||||||| |  ||||| || |||||||| ||||||| |||||||  | ||||| ||||||||||||||    
T  37340405 gacccgtgccccgcacgggtcttattagctggaacaaattgatacataataaaatgaaatatagtggaatgaaatttaaaaaatta 37340320  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 41862753 - 41862872
Alignment:
Q  97 actagaaccttgacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaattagaa 196  Q
    ||||||||  |||||||||| ||||| ||||| ||||| | | |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  41862753 actagaacgctgacccgtgcaccgcatgggtcgtatgagtcgaaataatttgatacacaataaaatgaaatatgttggaatgaaatttaaaaaattagaa 41862852  T
Q  197 tgcataaacaaaatttatcg 216  Q
    | ||| ||||||||||||||    
T  41862853 tacatgaacaaaatttatcg 41862872  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 51382520 - 51382581
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatat 169  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||| ||||||||||||||    
T  51382520 gacccatgcgccgcacgggtcttatgagccggaataatttgatacacgataaaacgaaatat 51382581  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 30063397 - 30063291
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaacaa 207  Q
    ||||| |||||| ||||||||| || || || ||||||||||||||||||||||| |||||| |||||||||||| | |||||||||||  || ||||||    
T  30063397 gacccatgcgccacacgggtctcataaactgaaataatttgatacacaataaaacaaaatatattagaatggaatctgaaaaattagaagacaaaaacaa 30063298  T
Q  208 aatttat 214  Q
    |||||||    
T  30063297 aatttat 30063291  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 2304329 - 2304246
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaat 191  Q
    ||||||||||||||| |||||||||||     |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  2304329 gacccgtgcgccgcatgggtcttatgagccaaaataatttgataaacaataaaacgaaatatgttaaaatggaatttaaaaaat 2304246  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 16030600 - 16030659
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaat 167  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  16030600 gacccgtgcgccgcacgggtcttatgagctcgaataatttgatacacaataaaacgaaat 16030659  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 33315947 - 33315847
Alignment:
Q  116 cgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaacaaaatttatc 215  Q
    |||||||||||||||||||  ||||||||||||||| | | ||||| |||||||  ||||||| |||||||||||||| | || | |||| |||||||||    
T  33315947 cgccgcacgggtcttatgagctggaataatttgatatatagtaaaatgaaatattgtagaatgaaatttaaaaaattaaactgtagaaacgaaatttatc 33315848  T
Q  216 g 216  Q
    |    
T  33315847 g 33315847  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 20910836 - 20910900
Alignment:
Q  156 ataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaacaaaatttatcggagt 220  Q
    ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||    
T  20910836 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttatcggagt 20910900  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 20925284 - 20925348
Alignment:
Q  156 ataaaacgaaatatgttagaatggaatttaaaaaattagaatgcataaacaaaatttatcggagt 220  Q
    ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||    
T  20925284 ataaaacgaaatatgttggaatggaatttaaaaaatcaaaatacataaacaaaatttatcggagt 20925348  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 15298461 - 15298379
Alignment:
Q  111 ccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaaaatta 193  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||||||| |||||||  | ||||||||||||||||||||    
T  15298461 ccgtgcgccgcacaggtcttattagctggaataatttgatacataataaaatgaaatatagtggaatggaatttaaaaaatta 15298379  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 31661154 - 31661211
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaa 165  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||    
T  31661154 gacccgtgcgccgcacaggtcttatgagccggaataatttgatacacaataaaacgaa 31661211  T

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Target: scaffold0192 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 19135 - 19239
Alignment:
Q  111 ccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttag-aatggaatttaaaaaattagaatgcataaacaaaa 209  Q
    ||||||||||||||||||||||||   ||||||| |  |||||||||||||| ||||||||| | |||||||| |||||| | ||||| |||||||||||    
T  19135 ccgtgcgccgcacgggtcttatgagccggaataacta-atacacaataaaacaaaatatgtttggaatggaatgtaaaaagtcagaatacataaacaaaa 19233  T
Q  210 tttatc 215  Q
    ||||||    
T  19234 tttatc 19239  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 42319963 - 42319906
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaa 165  Q
    ||||||||||||||||  |||||||||   ||||||||||||||||||||||||||||    
T  42319963 gacccgtgcgccgcacaagtcttatgagccggaataatttgatacacaataaaacgaa 42319906  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 45239372 - 45239425
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaa 161  Q
    |||||||||||||||||||||||||||   ||||||| ||||||||||||||||    
T  45239372 gacccgtgcgccgcacgggtcttatgagccggaataaattgatacacaataaaa 45239425  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 34310367 - 34310287
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaacgaaatatgttagaatggaatttaaaa 188  Q
    |||||||||||||||||||||||||||  || |||| ||||||||  | ||||||  ||||| || |||||||| ||||||    
T  34310367 gacccgtgcgccgcacgggtcttatgagctgaaatattttgatactaagtaaaacataatattttggaatggaacttaaaa 34310287  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 6673946 - 6673892
Alignment:
Q  108 gacccgtgcgccgcacgggtcttatgaattggaataatttgatacacaataaaac 162  Q
    |||||||||||||||||||||||||||    |||||||||| |||||||||||||    
T  6673946 gacccgtgcgccgcacgggtcttatgagcaagaataatttggtacacaataaaac 6673892  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 12444890 - 12444927
Alignment:
Q  107 tgacccgtgcgccgcacgggtcttatgaattggaataa 144  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  12444890 tgacccgtgcgccgcacgggtcttatgagatggaataa 12444927  T

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