View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_low_3 (Length: 537)
Name: NF14014_low_3
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Complemental strand, 22477818 - 22477307
Alignment:
| Q |
10 |
tcgaagaatatagaacacataaagcaatattagctatttttattgcatatcatcatatagcaacattagctacattgtaaccaaataagaaaaaacactt |
109 |
Q |
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||||| || ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22477818 |
tcgaataagatagaacacgtaaagcaacattagctattttcattgcatatcatcatatagcaacattagctacagtgtaaccaaataagaaaaaacactt |
22477719 |
T |
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| Q |
110 |
gtgatacaagcagcaaaaataagaaatgatgcctatattaggacttcaaatacaaaacttatttcaattttgtctccctcggcaatttcttcaccccttc |
209 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22477718 |
gtgatacaagcagcaaagataagaaatgatgcctatattaggacttcaaatacaaaacttatttcaattttgtctccctcggcaatttcttcaccccttc |
22477619 |
T |
|
| Q |
210 |
tccctagtcggggatttttnnnnnnntccaaaaccagttagagtgcaactattaaaatgcgactaaaatcgttctcaataatcaaaacttcaaaatagta |
309 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22477618 |
tccctagtcggggatttttaaaaaaatccaaaaccagttagagtgcaactattaaaatgcgactaaaatcattctcaataatcaaaacttcaaaatagta |
22477519 |
T |
|
| Q |
310 |
atagaatcgggagaaacacttattgaaaatcaggcttctctgggtaagtgcagccggacctttgaatgataacatttgctgcgtaacatccagctctcac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22477518 |
atagaatcgggagaaacacttattgaaaatcaggcttctctgggtaagtgcagccggacctttgaatgataacatttgctgcgtaacatccagctctcac |
22477419 |
T |
|
| Q |
410 |
acattcttcaataggtttctcctggaccaattgtgaaagaaatcctccaacaaaggcatctcctacaaaaacagaagnnnnnnntattgagttatgacta |
509 |
Q |
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| T |
22477418 |
acattcttcaataggtttctcctggaccaattgtgaaagaaatcctccaacaaaggcatctcctacaaaaacagaagaaaaaaatattgagttatgacta |
22477319 |
T |
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| Q |
510 |
gcacataacatg |
521 |
Q |
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|||||||||||| |
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| T |
22477318 |
gcacataacatg |
22477307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 66 - 486
Target Start/End: Original strand, 28167944 - 28168367
Alignment:
| Q |
66 |
atagcaacattagctacattgtaaccaaataagaaaaaacacttgtgata-caagcagcaaaaataagaaatgatgcctatat--taggacttcaaatac |
162 |
Q |
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|||||||||||||||||||| |||||||| || ||||| || ||||||| ||| |||||||||||||| |||||||| | || ||||||||||||||| |
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| T |
28167944 |
atagcaacattagctacatt-taaccaaaataggaaaaagacatgtgataacaaacagcaaaaataagatatgatgcccagataataggacttcaaatac |
28168042 |
T |
|
| Q |
163 |
a-aaacttatttcaattttgtctccctcggcaatttcttcaccccttctccctagtcggggatttttnnnnnnntccaaaaccagttagagtgcaactat |
261 |
Q |
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| T |
28168043 |
ataaacttatttgaattttgtctccctcagcaactttctcactccttctccctagtcagggatttaaaaaaaaatcccaaaccagttagagtgcaactat |
28168142 |
T |
|
| Q |
262 |
taaaatgcgactaaaatcgttctcaataatcaaaacttcaaaatagtaatagaatcgggagaaacacttattgaaaatcaggcttctctgggtaagtgca |
361 |
Q |
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| T |
28168143 |
tgaaatgcgactaaaatcgttctcaataatcaaaatttcataatagtaatcaaatcgggagaatcacttaatgaaaatcaggcttctctgggtaagtgca |
28168242 |
T |
|
| Q |
362 |
gccggacctttgaatgataacatttgctgcgtaacatccagctctcacacattcttcaataggtttctcctggaccaattgtgaaagaaatcctccaaca |
461 |
Q |
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||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
28168243 |
gccagacctttggatgataacatttgctgcataacacccagctctaacacattcttcaataggcttctcctgaaccaattgtgaaagaaatcctccaaca |
28168342 |
T |
|
| Q |
462 |
aaggcatctcctacaaaaacagaag |
486 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28168343 |
aaggcatctcctacaaaaacagaag |
28168367 |
T |
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