View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14014_low_8 (Length: 435)
Name: NF14014_low_8
Description: NF14014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14014_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 53957927 - 53957524
Alignment:
| Q |
16 |
atgggtacgtaatatttttcattcagtttcatggtgagagttacatgcaagcgttactagttatttcacttgaaattagtataacttatttaccatcata |
115 |
Q |
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| T |
53957927 |
atgggtacgtaatatttttcactcagtttcatggtgagagttacatgcaagcgttactagttatttcacttgaaattagtataaattatttaccatcata |
53957828 |
T |
|
| Q |
116 |
tatcatgtagatgccatggaagcagatattaccactgaaaagtatgtcaataaagagatggtttaaggaagtaaagctgaagaagaaagaagaacaaaga |
215 |
Q |
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| T |
53957827 |
tatcatgtagatgccatggaagcagatattaccactgaaaagtatgtcaataaagaaatggtttaaggaagtaaagctgaagaagaaagaagaacaaaga |
53957728 |
T |
|
| Q |
216 |
ttgcaaagagcagatgtgcatgcagcaatgtccattgcaggagttgcagcagcacttgctgcaattgcttctgaaaattcnnnnnnngagtcaaatgaag |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
53957727 |
ttgcaaagagcagaggtgcatgcagcaatgtccattgcaggagttgcagcagcacttgctgcaattgcttctgaaaattcaaaaaaagagtcaaatgaag |
53957628 |
T |
|
| Q |
316 |
atagagagaaagcaatagcctctgctgctgctttggtagctgctcagtgtgcaaaagtagctgaatcaatgggagctaagaaagaggatcttagaagtgt |
415 |
Q |
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| T |
53957627 |
atagagagaaagcaatagcctctgctgctgctttggtagctgctcagtgtgcaaaagtagctgaatcaatgggagctaagaaagaggatcttagaagtgt |
53957528 |
T |
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| Q |
416 |
tatt |
419 |
Q |
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|||| |
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| T |
53957527 |
tatt |
53957524 |
T |
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