View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14015_high_4 (Length: 590)

Name: NF14015_high_4
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14015_high_4
NF14015_high_4
[»] chr5 (1 HSPs)
chr5 (132-573)||(41737046-41737487)
[»] scaffold0280 (1 HSPs)
scaffold0280 (26-115)||(9411-9500)
[»] chr1 (3 HSPs)
chr1 (34-103)||(21910236-21910305)
chr1 (133-186)||(43328441-43328494)
chr1 (120-164)||(26390194-26390238)
[»] chr7 (1 HSPs)
chr7 (122-164)||(31924389-31924431)
[»] chr8 (1 HSPs)
chr8 (139-184)||(11815809-11815854)
[»] chr3 (1 HSPs)
chr3 (135-183)||(15544669-15544717)


Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 132 - 573
Target Start/End: Original strand, 41737046 - 41737487
Alignment:
Q  132 agacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacatttga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41737046 agacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacatttga 41737145  T
Q  232 tgaaaattgtcggtgctatggaggtagaaacgtgatttgttcnnnnnnnctttctttctttataaccattgctttttgtacaatttgtgcagagaaagag 331  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41737146 tgaaaattgtcggtgctatggaggtagaaacgtgatttgttcattttttctttctttctttataaccattgctttatgtacaatttgtgcagagaaagag 41737245  T
Q  332 tgtttgtgccaaaaacaaagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacagagg 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41737246 tgtttgtgccaaaaacaaagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacagagg 41737345  T
Q  432 tccaaatggtcaagaattgggcacatatggttcagcaactgtagcagttgaatcaaattttttctgtgcaactgagattacttttgaggtaagttaagac 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41737346 tccaaatggtcaagaattgggcacatatggttcagcaactgtagcagttgaatcaaattttttctgtgcaactgagattacttttgaggtaagttaagac 41737445  T
Q  532 ataatttttggcatagttctaaattgcaattacggttatgtt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41737446 ataatttttggcatagttctaaattgcaattacggttatgtt 41737487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 9500 - 9411
Alignment:
Q  26 aacactcacaacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatactactttagttaataataat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || |||| ||||| |||||||||||    
T  9500 aacactcacaacaaataacaaattaaacgacataactcaaatcacattagtaaaatagtcatcagtagtactcctttaattaataataat 9411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 21910305 - 21910236
Alignment:
Q  34 caacaaataacaaattaaacgacataactcaaatcacagctgtaaaatagtcatcattaatactacttta 103  Q
    ||||||||||||||| |||||||| |||| |||||| ||  ||||||||||| ||| || ||||||||||    
T  21910305 caacaaataacaaatcaaacgacagaactgaaatcaaagtagtaaaatagtcgtcagtagtactacttta 21910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 43328441 - 43328494
Alignment:
Q  133 gacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaa 186  Q
    ||||| |||||| |||||||||||||||||| | |  |||||||||||||||||    
T  43328441 gacactagacacaacactgacacgttgacacttataataatttgagaaaatgaa 43328494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 26390238 - 26390194
Alignment:
Q  120 aagcactaacatagacaccagacacgacactgacacgttgacacc 164  Q
    ||||||||||| ||||||| |||||||||||||| || |||||||    
T  26390238 aagcactaacagagacaccggacacgacactgactcgatgacacc 26390194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 31924389 - 31924431
Alignment:
Q  122 gcactaacatagacaccagacacgacactgacacgttgacacc 164  Q
    |||||||||| |||||||||||||| | |||||||||||||||    
T  31924389 gcactaacattgacaccagacacgaaattgacacgttgacacc 31924431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 11815809 - 11815854
Alignment:
Q  139 agacacgacactgacacgttgacacctctcgtaatttgagaaaatg 184  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||    
T  11815809 agacacgacactgacacgttgacaccaataataatttgagaaaatg 11815854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 15544669 - 15544717
Alignment:
Q  135 caccagacacgacactgacacgttgacacctctcgtaatttgagaaaat 183  Q
    |||| ||||||||||||||||||||||||| ||  |||||||| |||||    
T  15544669 cacctgacacgacactgacacgttgacaccgctaataatttgataaaat 15544717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University