View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14015_high_9 (Length: 326)

Name: NF14015_high_9
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14015_high_9
NF14015_high_9
[»] chr6 (24 HSPs)
chr6 (115-316)||(5433775-5433976)
chr6 (110-314)||(5447322-5447526)
chr6 (115-305)||(5096448-5096638)
chr6 (114-304)||(5128569-5128759)
chr6 (108-306)||(5278299-5278497)
chr6 (108-306)||(5284539-5284737)
chr6 (108-306)||(5176472-5176670)
chr6 (123-306)||(5074058-5074241)
chr6 (108-306)||(5690309-5690507)
chr6 (108-295)||(5354775-5354962)
chr6 (115-305)||(5157779-5157969)
chr6 (115-305)||(5102765-5102955)
chr6 (110-316)||(5344596-5344802)
chr6 (113-313)||(5147039-5147239)
chr6 (108-306)||(5257484-5257682)
chr6 (108-301)||(5383059-5383252)
chr6 (108-237)||(5396683-5396812)
chr6 (110-304)||(5182079-5182273)
chr6 (106-301)||(5446888-5447083)
chr6 (115-305)||(5370311-5370501)
chr6 (141-305)||(5244018-5244182)
chr6 (138-305)||(5350159-5350324)
chr6 (115-305)||(5066845-5067035)
chr6 (115-305)||(5425650-5425840)
[»] chr3 (4 HSPs)
chr3 (114-316)||(47986992-47987194)
chr3 (114-316)||(47996279-47996481)
chr3 (114-316)||(48005566-48005768)
chr3 (114-316)||(48014851-48015053)
[»] chr4 (20 HSPs)
chr4 (116-306)||(4344387-4344577)
chr4 (108-313)||(4124082-4124287)
chr4 (108-304)||(4360810-4361006)
chr4 (117-304)||(4335087-4335274)
chr4 (110-313)||(4133566-4133769)
chr4 (120-306)||(4320769-4320955)
chr4 (120-239)||(6772849-6772968)
chr4 (132-239)||(6815227-6815334)
chr4 (117-239)||(6498743-6498865)
chr4 (111-239)||(6758460-6758588)
chr4 (111-295)||(6837010-6837194)
chr4 (141-239)||(6752726-6752824)
chr4 (111-296)||(6715503-6715688)
chr4 (178-238)||(6650870-6650930)
chr4 (132-239)||(6675460-6675567)
chr4 (178-296)||(6532392-6532510)
chr4 (141-239)||(6728172-6728270)
chr4 (129-313)||(7885534-7885718)
chr4 (178-296)||(6796590-6796708)
chr4 (178-239)||(6545665-6545726)
[»] chr7 (3 HSPs)
chr7 (110-306)||(36213979-36214175)
chr7 (145-313)||(18935156-18935324)
chr7 (138-313)||(34724729-34724904)
[»] scaffold0294 (1 HSPs)
scaffold0294 (108-305)||(9051-9248)
[»] chr5 (1 HSPs)
chr5 (110-306)||(8877344-8877540)
[»] scaffold0552 (1 HSPs)
scaffold0552 (132-239)||(8502-8609)
[»] scaffold0373 (1 HSPs)
scaffold0373 (111-295)||(9426-9610)
[»] scaffold0813 (1 HSPs)
scaffold0813 (178-238)||(5044-5104)
[»] scaffold0286 (1 HSPs)
scaffold0286 (178-238)||(6462-6522)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 115 - 316
Target Start/End: Original strand, 5433775 - 5433976
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||||  ||||||| ||||||||||| || || ||||||| ||||||||| |||||||| |||||||||||||| |||||| ||||||||||    
T  5433775 tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaa 5433874  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggccta 314  Q
    | | ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  5433875 gttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaagattgtattggccta 5433974  T
Q  315 tg 316  Q
    ||    
T  5433975 tg 5433976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 110 - 314
Target Start/End: Original strand, 5447322 - 5447526
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    |||| |||||||||||||| |||| || ||||||| ||||||||| ||||||||||||  ||| ||| | | ||| |||||||||  ||||||| |||||    
T  5447322 atttttgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatctt 5447421  T
Q  210 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 309  Q
    |||||||| |||||||||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  5447422 gaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttggaagattgtattg 5447521  T
Q  310 gccta 314  Q
    |||||    
T  5447522 gccta 5447526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 5096448 - 5096638
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||||| |||| |||||||||||||| ||||| ||||||||||||| ||| ||||| ||||||||||||||| || ||||| ||||||| ||    
T  5096448 tgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaa 5096547  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    ||| ||||| |||||||||||||   | |||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||    
T  5096548 gctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgt 5096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 304
Target Start/End: Complemental strand, 5128759 - 5128569
Alignment:
Q  114 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 213  Q
    ||||||||||||| | ||||||| ||||||||||||||||  ||||||||||||| ||| ||||| ||||||||||||||| | || ||| |||||||||    
T  5128759 atgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaa 5128660  T
Q  214 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 304  Q
    |||| ||||||||||||||| |||   | |||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5128659 agctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttggaagattg 5128569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 306
Target Start/End: Original strand, 5278299 - 5278497
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    |||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  5278299 atatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatc 5278398  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    ||||||||||  |||||| |||||| |||||  | | |||| |||||| |||||||||| ||||| ||||||||||||||||| | |||||||||||||    
T  5278399 ttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgta 5278497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 306
Target Start/End: Complemental strand, 5284737 - 5284539
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| |||| || ||| |||||||| ||| ||||| |||    
T  5284737 atatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaatc 5284638  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    |||||||||| || ||||||||||||||||| || |||||| |||| |||||||||||| ||||||||||||||  | ||||| |||| |||| |||||    
T  5284637 ttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaattgctttgataaattttgaaggttgta 5284539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 108 - 306
Target Start/End: Original strand, 5176472 - 5176670
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    |||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  5176472 atatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatc 5176571  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    ||||||||||  |||||| |||||| |||||  |   |||| |||| | |||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  5176572 ttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgta 5176670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 123 - 306
Target Start/End: Complemental strand, 5074241 - 5074058
Alignment:
Q  123 cagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtac 222  Q
    |||||| ||||||| |||||||| |||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||| |||||||| | || ||||    
T  5074241 cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtac 5074142  T
Q  223 tcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    ||| ||||||||||||  | || ||| |||||| ||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  5074141 tcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgta 5074058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 306
Target Start/End: Complemental strand, 5690507 - 5690309
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    |||||||| |||||| ||| | ||||||| || |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| | ||||| |||    
T  5690507 atatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaatc 5690408  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    ||||||||||  |||||||||||||||||||  |   |||| |||| | |||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  5690407 ttgaaaagctaatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttggaagattgta 5690309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 295
Target Start/End: Complemental strand, 5354962 - 5354775
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    |||| |||||||||||||||  ||||| | ||||||||||||||||| |||||||| |||| ||| ||||| ||||| ||||||||  || ||||| |||    
T  5354962 atatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaatc 5354863  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 295  Q
    |||||||||| |||||||||||||||||||   | |||||  ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5354862 ttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaattt 5354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 115 - 305
Target Start/End: Complemental strand, 5157969 - 5157779
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||| | |||| || || |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| || ||||| ||||||| ||    
T  5157969 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa 5157870  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    ||| |||||||||||||||||||   | |||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||    
T  5157869 gctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgt 5157779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 115 - 305
Target Start/End: Complemental strand, 5102955 - 5102765
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||||| |||| || ||||||||||| ||||| ||||||||||||| ||| || || ||||| ||||||||| |||||||| ||||||| ||    
T  5102955 tgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaa 5102856  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    ||| |||||||||||||||||||   | |||||| ||| ||||| ||||||| |||||| | |||| ||||| ||||||||||||||||||    
T  5102855 gctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttctaatagatttggaagattgt 5102765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 110 - 316
Target Start/End: Original strand, 5344596 - 5344802
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    |||||||||||| |||| | ||||||| ||||||||||||||||| |||||||||||||| || | ||||||||| ||||||||  |||| ||| |||||    
T  5344596 atttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatctt 5344695  T
Q  210 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 309  Q
    |||||| | ||||||   |||||||||||| | | ||||||||||| |||||||||| ||||||| ||||||||||| ||  |||||||||| |||| |     
T  5344696 gaaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattcttctcattaatttggaagactgtatta 5344795  T
Q  310 gcctatg 316  Q
    |||||||    
T  5344796 gcctatg 5344802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 313
Target Start/End: Complemental strand, 5147239 - 5147039
Alignment:
Q  113 tatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaa 212  Q
    |||||||||||||||| ||||||| || ||||||||||| || ||||| ||||||||| | ||||| |||||| |||||| |||||||||| ||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaa 5147140  T
Q  213 aagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcc 312  Q
     | || ||||||   ||||||||||   | |||||  |||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||    
T  5147139 caactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttggaagattgtactagcc 5147040  T
Q  313 t 313  Q
    |    
T  5147039 t 5147039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 306
Target Start/End: Complemental strand, 5257682 - 5257484
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| | || ||| |||  || ||| |||||||| ||| ||||| |||    
T  5257682 atatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaatc 5257583  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    |||||||| | |||||||||||||||||||  || |||  | ||||| | ||||||||| ||||||| |||||| || ||||| |||||||||||||||    
T  5257582 ttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaattgttttgataaatttggaagattgta 5257484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 301
Target Start/End: Original strand, 5383059 - 5383252
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||||||||||||||| |||||| ||||||||| || || || |||||||||||||| ||    || ||||||||||| ||||| |||||| |||    
T  5383059 atatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatc 5383158  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaaga 301  Q
    |||||||||| ||||||  ||||||||| ||  | || ||| ||||||||||||||||| ||||||| ||||||||||||||  ||||||||||    
T  5383159 ttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaaga 5383252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 5396683 - 5396812
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||    
T  5396683 atatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaatc 5396782  T
Q  208 ttgaaaagctcgtactcaaagattgtccaa 237  Q
    ||||| | || ||| |||  ||||||||||    
T  5396783 ttgaacaactagtagtcactgattgtccaa 5396812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 304
Target Start/End: Complemental strand, 5182273 - 5182079
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||  || | || ||||||||||||||||||||| | |||    
T  5182273 atttctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaacctt 5182174  T
Q  210 gaaaagctcgtactcaaagattgtcc-aagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 304  Q
    ||| || | ||||||| ||||||||| |||| | |||||  |||| |  || |||||| ||||||||||||| ||| ||||| |||||||||||||    
T  5182173 gaacagttagtactcacagattgtccgaagt-tgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatttggaagattg 5182079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 301
Target Start/End: Original strand, 5446888 - 5447083
Alignment:
Q  106 atatatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgcctta 205  Q
    |||| ||| |||||||||||||| ||||||| || |||||||||||||| || ||||| || ||||| ||||||| ||| ||||||||||||  |||| |    
T  5446888 atatttttttgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaa 5446987  T
Q  206 tcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaaga 301  Q
    |||| |||| || |||||||||||||| |||    | |||||| |||| ||||||||  |||||||||||||||||||||||||| | ||||||||    
T  5446988 tcttcaaaaactagtactcaaagattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaattcttctgataaacttggaaga 5447083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 5370311 - 5370501
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||| | |||| || || |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| |||||||| | ||||||||    
T  5370311 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa 5370410  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    | | ||||||||||||||| |||  || |||||| ||||||||||||||||  |||||    |||||||||| |||||||| |||||||||    
T  5370411 gttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt 5370501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 5244182 - 5244018
Alignment:
Q  141 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtc 240  Q
    |||||||| ||||| ||||||||||||| ||| || || ||||||||||||||| || || |  ||||||||||||| ||||||||||||||| | |||     
T  5244182 aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaagctagtactcaaagattgttc-agtg 5244084  T
Q  241 tt-tctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    || || ||||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||||    
T  5244083 ttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattgt 5244018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 5350159 - 5350324
Alignment:
Q  138 ctgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaa 237  Q
    ||||||||||| ||||| |||||||||  || ||| ||||| ||||  ||||||||| || ||||| ||||||||||||| |||||||||||||||||||    
T  5350159 ctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactcaaagattgtccaa 5350256  T
Q  238 gtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
       | || ||| ||||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||    
T  5350257 tgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttggaggattgt 5350324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 305
Target Start/End: Complemental strand, 5067035 - 5066845
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||||||||||||| |||| || ||||||||||| ||||| || |||||||||| ||| |  || ||||| ||||||||| |  ||||| ||||||||||    
T  5067035 tgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaa 5066936  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    ||| |||||||||||||||||||   | || ||| |||||||||  || ||| | |||| | |||||||||| ||||||||||||||||||    
T  5066935 gctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaattcttctaatagatttggaagattgt 5066845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 305
Target Start/End: Original strand, 5425650 - 5425840
Alignment:
Q  115 tgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaa 214  Q
    |||| |||||| || |||| || ||||||||||| ||||| ||||||||||||| ||| || |  ||||| |||||| ||  | ||||| ||||||||||    
T  5425650 tgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaa 5425749  T
Q  215 gctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    ||| || ||||||||||||||||   | |||||||||||||||||||||||| ||||||   |||||||||| ||| |||| |||||||||    
T  5425750 gctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattgt 5425840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 47987194 - 47986992
Alignment:
Q  114 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 213  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  47987194 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47987095  T
Q  214 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  47987094 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47986995  T
Q  314 atg 316  Q
    |||    
T  47986994 atg 47986992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 47996481 - 47996279
Alignment:
Q  114 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 213  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  47996481 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 47996382  T
Q  214 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  47996381 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 47996282  T
Q  314 atg 316  Q
    |||    
T  47996281 atg 47996279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 48005768 - 48005566
Alignment:
Q  114 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 213  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  48005768 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48005669  T
Q  214 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  48005668 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48005569  T
Q  314 atg 316  Q
    |||    
T  48005568 atg 48005566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 48015053 - 48014851
Alignment:
Q  114 atgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaa 213  Q
    ||||||||||||| | |||| || || |||||||||||||| ||||||||||||||||| |||| || ||  |||||||||||| ||||| |||| ||||    
T  48015053 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaa 48014954  T
Q  214 agctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
    |||| |||||||||||||| ||||   | |||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||| | ||||    
T  48014953 agctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagcct 48014854  T
Q  314 atg 316  Q
    |||    
T  48014853 atg 48014851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 4344387 - 4344577
Alignment:
Q  116 gttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaag 215  Q
    ||||||||||||| ||||  | ||||||||||||||||| ||||||||||||| ||| ||||| || || ||||||||| |||||||| |||||||||||    
T  4344387 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaag 4344486  T
Q  216 ctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    || |||||||||||||||||||| || ||||||||||| |  || |||||||||||||| ||||||||| ||||| ||||| || ||||||    
T  4344487 ctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatttgaaaaattgta 4344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 108 - 313
Target Start/End: Complemental strand, 4124287 - 4124082
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    |||||| |||||||||||||  ||||| | ||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| |||||||| | |    
T  4124287 atatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaacc 4124188  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtac 307  Q
    |||||||||| |||||||||||||||||||| || |||||| | || | ||  ||||||||||| || ||| ||||| ||||| ||||| ||||||||||    
T  4124187 ttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagattgtac 4124088  T
Q  308 tggcct 313  Q
    | ||||    
T  4124087 tagcct 4124082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 108 - 304
Target Start/End: Original strand, 4360810 - 4361006
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||||| || ||| || ||||| | ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||||||| |||||||| |||    
T  4360810 atatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatc 4360909  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 304  Q
    |||||||||| ||||| |||||||||||||| || ||||||||||| |  || |||||||||||||| ||||||||| ||||| ||||| |||||||    
T  4360910 ttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattg 4361006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 304
Target Start/End: Original strand, 4335087 - 4335274
Alignment:
Q  117 ttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagc 216  Q
    |||||||||||| ||||| |  |||||||||||||||| ||||||||||||||||||||||| ||||| || |||||| |||||||| |||||||||| |    
T  4335087 ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacc 4335186  T
Q  217 tcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattg 304  Q
    | ||||||||||||||||| || || |||||| | || | ||  ||||||||||| || ||| ||||| ||||| ||||| |||||||    
T  4335187 tagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatttgaaagattg 4335274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 313
Target Start/End: Complemental strand, 4133769 - 4133566
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    |||| |||||||||||||||||||||| || ||| |||||||||| ||||||||||||| ||||  ||| |||||||| |||||| || ||||| ||||     
T  4133769 atttttgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatcta 4133670  T
Q  210 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactg 309  Q
    ||||| ||  ||||||||||||||||||| || |||||| |||| | || |||||| |||||| ||||| ||||  | ||| ||||| |||| ||||||     
T  4133669 gaaaaactaatactcaaagattgtccaaggctgtctgaggtttcccataccattggtcatctccataaagttctcattataaatttgaaagactgtacta 4133570  T
Q  310 gcct 313  Q
    ||||    
T  4133569 gcct 4133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 120 - 306
Target Start/End: Complemental strand, 4320955 - 4320769
Alignment:
Q  120 ttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcg 219  Q
    ||||||||| ||||| | ||||| ||||| ||||| |||||||||||| || | ||||| ||||| ||||||||| |||||||| ||||||||||||| |    
T  4320955 ttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctag 4320856  T
Q  220 tactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    | ||| ||||||| ||||| || ||| || |||| | |||||||||||||||||| ||| || || ||||| ||||| |||||||||    
T  4320855 tgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatttgaaagattgta 4320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 6772849 - 6772968
Alignment:
Q  120 ttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcg 219  Q
    ||||||| ||| ||||| || |||||||| ||||| |||||||| ||| || | ||  ||||||||||||||||| |||||||  ||||||||||||| |    
T  6772849 ttgcagatgctagagaatctaaaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctag 6772948  T
Q  220 tactcaaagattgtccaagt 239  Q
    |||||||  |||||||||||    
T  6772949 tactcaagaattgtccaagt 6772968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 6815227 - 6815334
Alignment:
Q  132 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 231  Q
    ||||| || |||||||| ||||||||||||||||   || | ||  |||||||||||||| || |||||||  ||||||||||||| ||||||||| |||    
T  6815227 gagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaatt 6815326  T
Q  232 gtccaagt 239  Q
    ||||||||    
T  6815327 gtccaagt 6815334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 6498865 - 6498743
Alignment:
Q  117 ttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagc 216  Q
    |||||||||| ||| ||||| || |||||||| ||||| |||||||||||  || | |   |||||||||||||| |  |||||||| || |||||||||    
T  6498865 ttcttgcagatgctagagaatcttaaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagc 6498766  T
Q  217 tcgtactcaaagattgtccaagt 239  Q
    | ||||||||||| |||||||||    
T  6498765 tagtactcaaagactgtccaagt 6498743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 6758460 - 6758588
Alignment:
Q  111 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 210  Q
    ||||| |||||||||| ||| ||||| ||||||||||| ||||| ||||||||||   || | ||  ||| ||||||||||||  |||| ||| ||||||    
T  6758460 tttattttcttgcagaagctagagaatctgaaaattcttaatcttagtcattctctggatttgactaaaagcccagacttttcctactttcctaatcttg 6758559  T
Q  211 aaaagctcgtactcaaagattgtccaagt 239  Q
    ||||||| || |||||| | |||||||||    
T  6758560 aaaagctggtgctcaaaaactgtccaagt 6758588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 295
Target Start/End: Original strand, 6837010 - 6837194
Alignment:
Q  111 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 210  Q
    ||||| |||||||||| |||  ||||  | |||||||| ||||| |||||||||||  || | ||  |||| |||||||| ||| |  ||||  ||||||    
T  6837010 tttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttg 6837109  T
Q  211 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 295  Q
    ||||||| ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| ||||| ||||||||||| ||||    
T  6837110 aaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 6837194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 6752726 - 6752824
Alignment:
Q  141 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 239  Q
    |||||||| ||||| |||||||||||  || | ||  |||| |||||||||||| |  ||||| ||||||||||||| ||||||||||| |||||||||    
T  6752726 aaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaatcttgaaaagcttgtactcaaagactgtccaagt 6752824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 6715503 - 6715688
Alignment:
Q  111 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 210  Q
    ||||| |||||||||| ||| ||||| || ||| |||| ||||| || ||||||| | || | ||  |||| |||||||||||| || ||||  ||||||    
T  6715503 tttattttcttgcagatgctagagaatctaaaagttcttaatctcagccattctcttgatttgactgaaacaccagacttttcatacatgccaaatcttg 6715602  T
Q  211 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttg 296  Q
    |||||||  ||||| |||| ||||||||| | |||  | | || | ||||||||||  |||  ||||||||||||||||| |||||    
T  6715603 aaaagcttatactcgaagactgtccaagtttgtctacggtctcccatagcattggatctctgcataaaattcttctgataaatttg 6715688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 6650870 - 6650930
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 238  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  6650870 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6650930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 6675460 - 6675567
Alignment:
Q  132 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 231  Q
    ||||| || |||||||| ||||| |||||||||||  || |  |  ||||||||||||||||| |||||||  || |||||||||| || |||||||| |    
T  6675460 gagaatctaaaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagact 6675559  T
Q  232 gtccaagt 239  Q
    ||||||||    
T  6675560 gtccaagt 6675567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 6532510 - 6532392
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataa 277  Q
    |||||||| |||||||| |  ||||| ||||||||||| | ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| | ||    
T  6532510 aaaccccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccaaaa 6532411  T
Q  278 aattcttctgatagatttg 296  Q
    | ||||||||||| |||||    
T  6532410 acttcttctgataaatttg 6532392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 6728172 - 6728270
Alignment:
Q  141 aaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 239  Q
    |||||||| ||||| ||||||||||   || | ||  ||||||||||||||||  |||| ||| |||||||||||||||| |||||| | |||||||||    
T  6728172 aaaattcttaatcttagtcattctctggatttgactgaaaccccagacttttcctacttacctaatcttgaaaagctcgtgctcaaaaactgtccaagt 6728270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 7885718 - 7885534
Alignment:
Q  129 ctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaag 228  Q
    |||| ||| ||||||||||| ||| | |||||||||||  |  | | ||| ||||| ||||||||||| |||||  ||||||||||| |  |||| || |    
T  7885718 ctggtgaagctgaaaattcttaatttgagtcattctcacaacttgagacatacccccgacttttcaaaattgccaaatcttgaaaagttaatacttaagg 7885619  T
Q  229 attgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
    ||||||| ||| | |||  | ||||| |||  || ||||||||||| || |||||| | ||| ||||| |||||||||| |||||    
T  7885618 attgtcccagtttgtcttcggtttcttctaatataggacatctcaaaaagattcttttaataaatttgaaagattgtacaggcct 7885534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 6796590 - 6796708
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataa 277  Q
    |||||||||||||| || |||| ||  ||||||||||||| ||||| ||| ||||||||||| | |||  | | || | ||||||||||  |||  ||||    
T  6796590 aaaccccagactttacatacttaccaaatcttgaaaagctagtactaaaaaattgtccaagtttgtctacggtctcccatagcattggatctctacataa 6796689  T
Q  278 aattcttctgatagatttg 296  Q
    ||||||||| ||| |||||    
T  6796690 aattcttctcataaatttg 6796708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 6545726 - 6545665
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagt 239  Q
    ||||||||||||||||| |  ||||| ||||||||||| | ||||||||||  |||||||||    
T  6545726 aaaccccagacttttcatatatgcctaatcttgaaaagatagtactcaaaggctgtccaagt 6545665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 36214175 - 36213979
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    |||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||| | || ||||| ||||||||| ||||| | |||    
T  36214175 atttctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaacctt 36214076  T
Q  210 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    ||||| || ||||||| ||||||||||||  | |||||| |||| |  || |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  36214075 gaaaaactagtactcacagattgtccaagattgtctgaggtttcccacagtattggacatctcaataaagttcttctaataaatttggaagattgta 36213979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 313
Target Start/End: Original strand, 18935156 - 18935324
Alignment:
Q  145 ttctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaagtctttc 244  Q
    |||| ||||| |||||||||||| | || | |||||||||  ||||||||||||||||  ||||||||||| |  ||||||||||||| |||||| | ||    
T  18935156 ttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgcccaagtttgtc 18935255  T
Q  245 tgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
       | |||||| ||| || |||| |||||| ||||||||| | ||| ||||| |||| ||||| |||||    
T  18935256 ctcggtttctcatagtataggacttctcaagaaaattcttttaataaatttgaaagactgtacaggcct 18935324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 313
Target Start/End: Complemental strand, 34724904 - 34724729
Alignment:
Q  138 ctgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaa 237  Q
    |||||| |||| ||||| |||||||||||| |  | | |||||| |||||||||||| |||||||  ||||||||||| |  ||||||||||||||||||    
T  34724904 ctgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtccaa 34724805  T
Q  238 gtct-ttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgtactggcct 313  Q
     | | | || || |||||||||  || ||| ||||||| ||||||||  ||||| ||||| |||| ||||| |||||    
T  34724804 atttgtcctcag-tttctcctaatataggaaatctcaagaaaattctattgataaatttgaaagactgtacaggcct 34724729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 305
Target Start/End: Complemental strand, 9248 - 9051
Alignment:
Q  108 atatttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatc 207  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| | |  || ||||||||||||||| | |||||| |||    
T  9248 atatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatc 9149  T
Q  208 ttgaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgt 305  Q
    |||||||||| |||||||||||||||||||   |  | ||| |||||| || ||||||| |||||  | |||| ||||| ||||||||||||||||||    
T  9148 ttgaaaagctagtactcaaagattgtccaatgttgaccgaggtttctcataccattggagatctcggtgaaatacttctaatagatttggaagattgt 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 8877344 - 8877540
Alignment:
Q  110 atttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatctt 209  Q
    ||||||||||||||||||| ||||||| || |||||||||||||| || || |||||| |||| |||||||| |||||||||| |||||||||| |||||    
T  8877344 atttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatctt 8877443  T
Q  210 gaaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagatttggaagattgta 306  Q
    |||||||| ||||||||||||||||| ||  |    |||||||| | ||  || |||| ||| |||||| ||||| ||||| |||||||||||||||    
T  8877444 gaaaagctagtactcaaagattgtccgaggttgatagagatttcgcatactataggacttctgaataaagttcttttgataaatttggaagattgta 8877540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 8609 - 8502
Alignment:
Q  132 gagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagatt 231  Q
    ||||| || |||||||| ||||||||||||||||   || | ||  |||||||||||||| || |||||||  ||||||||||||| ||||||||| |||    
T  8609 gagaatctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaatt 8510  T
Q  232 gtccaagt 239  Q
    ||||||||    
T  8509 gtccaagt 8502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 295
Target Start/End: Original strand, 9426 - 9610
Alignment:
Q  111 tttatgttcttgcagaggctggagaaactgaaaattctcaatctaagtcattctcattatctaacacaaaccccagacttttcaaacttgccttatcttg 210  Q
    ||||| |||||||||| |||  ||||  | |||||||| ||||| |||||||||||  || | ||  |||| |||||||| ||| |  ||||  ||||||    
T  9426 tttattttcttgcagatgctaaagaacttaaaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttg 9525  T
Q  211 aaaagctcgtactcaaagattgtccaagtctttctgagatttctcctagcattggacatctcaataaaattcttctgatagattt 295  Q
    ||||||| ||||||||||| ||||||||| | |||| | | || | ||||||||||  |||| ||||| ||||||||||| ||||    
T  9526 aaaagctagtactcaaagactgtccaagtttgtctgcggtctcccatagcattggatctctccataaacttcttctgataaattt 9610  T

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Target: scaffold0813 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 5104 - 5044
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 238  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  5104 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 6462 - 6522
Alignment:
Q  178 aaaccccagacttttcaaacttgccttatcttgaaaagctcgtactcaaagattgtccaag 238  Q
    |||||||||||||||||  | ||||| ||||||||||||| ||||||||||| ||||||||    
T  6462 aaaccccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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