View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14015_low_1 (Length: 643)
Name: NF14015_low_1
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14015_low_1 |
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| [»] chr4 (9 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Complemental strand, 23869570 - 23868948
Alignment:
| Q |
18 |
agaactttcatacacgaatgttaagaatgcaataggcaatacacggtacctaatagacaggcctgtacttacaaatacaattctaaaaacactaggttag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23869570 |
agaactttcatacacgaatgttaagaatgcaataggcaatacacg-tacctaatagacaggcctgtacttacaaatacaattctaaaaacactaggttag |
23869472 |
T |
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| Q |
118 |
atagaaattttggaaagtcttaacagtaagaattaaaaaccagtccattgttagtcattaaaagtcaattaaaattcattattcattctaaaacaaaaca |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23869471 |
atagaaattttggaaagtct-aacagtaagaattaaaaaccagtccattgtttgtcattaaaagtcaattaaaattcattattc----taaaacaaaaca |
23869377 |
T |
|
| Q |
218 |
tgatcaattatatatcattactcagtaaaacccatagcaattgttcaaaacnnnnnnnn---cttgtgataaagttcttggcataatgatataagatggt |
314 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23869376 |
tgatcaactatatatcattactcagtaaaacccgtagcaattgttcaaaaaaaaaaaaaaaacttgtgataaagttcttggcataatgatataagatggt |
23869277 |
T |
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| Q |
315 |
tttactttcttggtttaaatagcgcttcatgctttcttacacaaattaaacaaccaagaaactaagcaaattgaaccatgcaaattttttgtagtcaaaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23869276 |
tttactttcttggtttaaatagcgcttcatgctttctcatacaaattaaacaaccaagaaactaagcaaattgaaccatgcaaattttttgtagtcaaaa |
23869177 |
T |
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| Q |
415 |
tatcattcattccatcattatgatacacagaaaaaccaaccagatccaattactacttcactacaaattcgaaagcaaaaaattaaaatatctaagagtt |
514 |
Q |
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| T |
23869176 |
tatcattcattccatcattatgatacacagaaagaccaaccagatccaattactacttcactacaaattcgaaagcaaaaatttaaaatatctaagagtt |
23869077 |
T |
|
| Q |
515 |
cctaagatcagataaagtaacatcaaaccaagcaaataaatcccacaaaagtcaacgaaattatcttagatctaagaactagtgaacttagtcacagctt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23869076 |
cctaagatcagataaagtaacatcaaaccaagcaaataaatcccacaaaagtcaacgaaattatcttagatctaagaactagtgaacttagtcacagctt |
23868977 |
T |
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| Q |
615 |
ttgttccttcagaaacagcatgcttggcc |
643 |
Q |
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| T |
23868976 |
ttgttccttcagaaacagcatgtttggcc |
23868948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 24307498 - 24307439
Alignment:
| Q |
584 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||| |
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| T |
24307498 |
atctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggcc |
24307439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 582 - 643
Target Start/End: Original strand, 23453373 - 23453434
Alignment:
| Q |
582 |
agatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
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|||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||| |
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| T |
23453373 |
agatctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggcc |
23453434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 23886102 - 23886043
Alignment:
| Q |
584 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
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|||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
23886102 |
atctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggcc |
23886043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 643
Target Start/End: Original strand, 23408544 - 23408602
Alignment:
| Q |
585 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
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||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||| |
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| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
23408602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 23402349 - 23402290
Alignment:
| Q |
584 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||| |
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| T |
23402349 |
atctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggcc |
23402290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 26434299 - 26434240
Alignment:
| Q |
584 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||| |
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| T |
26434299 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc |
26434240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 643
Target Start/End: Complemental strand, 26833010 - 26832951
Alignment:
| Q |
584 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
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|||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||| |
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| T |
26833010 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc |
26832951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 585 - 643
Target Start/End: Original strand, 23415713 - 23415771
Alignment:
| Q |
585 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
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||||||| ||||| |||||||||||||| || || || ||||||||||||||||||||| |
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| T |
23415713 |
tctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggcc |
23415771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 643
Target Start/End: Complemental strand, 47317554 - 47317498
Alignment:
| Q |
587 |
taagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggcc |
643 |
Q |
| |
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||||||||||| ||||| ||||||||||| || || ||||||||| |||| |||||| |
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| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggcc |
47317498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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