View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14015_low_3 (Length: 590)

Name: NF14015_low_3
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14015_low_3
NF14015_low_3
[»] chr4 (39 HSPs)
chr4 (204-441)||(40059369-40059608)
chr4 (12-202)||(20129290-20129480)
chr4 (12-203)||(34407281-34407472)
chr4 (428-590)||(40059631-40059796)
chr4 (12-202)||(26439276-26439466)
chr4 (12-202)||(13012168-13012358)
chr4 (12-202)||(25930688-25930878)
chr4 (12-202)||(47500753-47500943)
chr4 (12-203)||(43355883-43356074)
chr4 (12-203)||(29319702-29319893)
chr4 (12-198)||(36382343-36382528)
chr4 (12-202)||(43143581-43143771)
chr4 (12-175)||(42333773-42333936)
chr4 (12-199)||(17511230-17511417)
chr4 (12-175)||(3292893-3293056)
chr4 (12-182)||(30216739-30216909)
chr4 (12-182)||(6690232-6690402)
chr4 (12-199)||(40528996-40529185)
chr4 (12-180)||(48989330-48989498)
chr4 (12-175)||(50205074-50205237)
chr4 (12-199)||(10352881-10353068)
chr4 (12-163)||(44156670-44156821)
chr4 (14-175)||(29995982-29996143)
chr4 (12-199)||(6235515-6235690)
chr4 (12-174)||(30077628-30077790)
chr4 (12-158)||(35545977-35546123)
chr4 (12-161)||(28877247-28877396)
chr4 (28-182)||(26448053-26448206)
chr4 (12-147)||(1817752-1817887)
chr4 (85-163)||(48129985-48130063)
chr4 (12-104)||(13392878-13392970)
chr4 (12-104)||(13396017-13396109)
chr4 (56-180)||(30109958-30110084)
chr4 (97-199)||(27363344-27363446)
chr4 (82-163)||(45194195-45194276)
chr4 (89-157)||(6254569-6254637)
chr4 (141-202)||(7769308-7769369)
chr4 (12-49)||(30110108-30110145)
chr4 (12-49)||(48130111-48130148)
[»] chr2 (22 HSPs)
chr2 (12-202)||(41251631-41251821)
chr2 (12-202)||(17445038-17445226)
chr2 (12-202)||(6403801-6403991)
chr2 (12-202)||(42439966-42440156)
chr2 (12-203)||(35962694-35962885)
chr2 (12-202)||(18981597-18981786)
chr2 (12-198)||(31581619-31581805)
chr2 (12-202)||(32127138-32127328)
chr2 (45-202)||(2958131-2958287)
chr2 (12-202)||(16405580-16405770)
chr2 (12-182)||(45418583-45418753)
chr2 (16-175)||(771006-771165)
chr2 (12-163)||(12756834-12756985)
chr2 (12-182)||(44084600-44084770)
chr2 (16-182)||(8147351-8147518)
chr2 (12-160)||(8059330-8059478)
chr2 (26-157)||(2285887-2286018)
chr2 (12-163)||(26162699-26162847)
chr2 (56-158)||(4555250-4555354)
chr2 (74-182)||(26237957-26238065)
chr2 (56-173)||(7072589-7072710)
chr2 (107-167)||(34905964-34906024)
[»] chr3 (21 HSPs)
chr3 (12-203)||(22968441-22968632)
chr3 (16-202)||(6269427-6269613)
chr3 (12-202)||(19390126-19390316)
chr3 (12-202)||(39771770-39771960)
chr3 (12-198)||(34084119-34084305)
chr3 (12-202)||(11018209-11018399)
chr3 (12-182)||(45182981-45183151)
chr3 (12-182)||(6930891-6931061)
chr3 (12-163)||(27935197-27935348)
chr3 (12-199)||(40081738-40081922)
chr3 (12-204)||(6503566-6503758)
chr3 (12-182)||(33040953-33041123)
chr3 (31-175)||(19565517-19565661)
chr3 (12-174)||(45335883-45336044)
chr3 (12-182)||(35514266-35514432)
chr3 (56-167)||(5135284-5135397)
chr3 (279-373)||(52999745-52999838)
chr3 (125-198)||(22922141-22922214)
chr3 (12-62)||(22922215-22922265)
chr3 (12-49)||(5135421-5135458)
chr3 (273-368)||(20631886-20631981)
[»] scaffold0069 (1 HSPs)
scaffold0069 (12-202)||(17822-18012)
[»] chr5 (24 HSPs)
chr5 (12-202)||(36293618-36293808)
chr5 (12-202)||(39434676-39434866)
chr5 (12-199)||(10033910-10034097)
chr5 (12-199)||(13817960-13818147)
chr5 (12-202)||(26283315-26283505)
chr5 (12-163)||(16155016-16155167)
chr5 (12-202)||(39657503-39657693)
chr5 (16-198)||(1776377-1776559)
chr5 (12-175)||(12278857-12279020)
chr5 (12-182)||(17332548-17332718)
chr5 (12-152)||(16333873-16334013)
chr5 (15-195)||(19985926-19986106)
chr5 (12-163)||(33430340-33430491)
chr5 (12-182)||(31680367-31680537)
chr5 (12-203)||(37254620-37254811)
chr5 (31-202)||(3155647-3155818)
chr5 (12-165)||(43068894-43069047)
chr5 (27-163)||(31501728-31501864)
chr5 (12-180)||(36291373-36291541)
chr5 (56-160)||(28801309-28801415)
chr5 (271-373)||(3158854-3158955)
chr5 (97-163)||(202658-202724)
chr5 (288-373)||(27908254-27908338)
chr5 (12-49)||(28801439-28801476)
[»] chr7 (20 HSPs)
chr7 (12-202)||(14777104-14777294)
chr7 (12-202)||(5555467-5555657)
chr7 (12-202)||(3114093-3114283)
chr7 (12-198)||(8394109-8394295)
chr7 (12-198)||(36630800-36630986)
chr7 (12-182)||(37002141-37002311)
chr7 (12-167)||(40920000-40920155)
chr7 (12-182)||(34389053-34389223)
chr7 (12-173)||(35090177-35090338)
chr7 (12-182)||(8867728-8867898)
chr7 (16-167)||(38638237-38638388)
chr7 (12-182)||(43184465-43184635)
chr7 (12-175)||(26624752-26624916)
chr7 (26-162)||(33685584-33685720)
chr7 (12-163)||(36658200-36658351)
chr7 (12-182)||(7002725-7002895)
chr7 (12-182)||(7048596-7048766)
chr7 (56-123)||(10868514-10868583)
chr7 (107-195)||(26502797-26502885)
chr7 (107-195)||(26589829-26589917)
[»] chr1 (16 HSPs)
chr1 (12-205)||(26144232-26144425)
chr1 (12-202)||(7433425-7433615)
chr1 (12-195)||(32982053-32982236)
chr1 (12-199)||(42310938-42311125)
chr1 (12-174)||(321374-321536)
chr1 (12-162)||(3829004-3829153)
chr1 (12-203)||(35907531-35907722)
chr1 (16-163)||(17445332-17445479)
chr1 (76-202)||(23313218-23313345)
chr1 (56-199)||(41972314-41972458)
chr1 (56-182)||(33489687-33489815)
chr1 (267-373)||(31649508-31649614)
chr1 (97-166)||(35951427-35951496)
chr1 (113-163)||(48901203-48901253)
chr1 (267-373)||(13197904-13198009)
chr1 (12-49)||(33489839-33489876)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-203)||(480454-480645)
[»] chr6 (12 HSPs)
chr6 (12-202)||(398597-398787)
chr6 (12-203)||(34948755-34948946)
chr6 (12-202)||(13837801-13837991)
chr6 (12-182)||(28996730-28996900)
chr6 (12-182)||(18339106-18339276)
chr6 (12-163)||(33229333-33229484)
chr6 (12-163)||(29743302-29743453)
chr6 (86-163)||(31028435-31028512)
chr6 (97-163)||(24697899-24697965)
chr6 (97-154)||(24695515-24695572)
chr6 (107-154)||(24072576-24072623)
chr6 (107-163)||(3050098-3050154)
[»] scaffold2142 (1 HSPs)
scaffold2142 (12-202)||(502-692)
[»] chr8 (16 HSPs)
chr8 (12-199)||(29728383-29728570)
chr8 (12-202)||(39914495-39914684)
chr8 (12-175)||(16788022-16788185)
chr8 (14-199)||(3648793-3648978)
chr8 (26-198)||(15838270-15838441)
chr8 (12-202)||(34136822-34137012)
chr8 (12-182)||(4404008-4404178)
chr8 (12-182)||(23402108-23402278)
chr8 (12-160)||(9877242-9877390)
chr8 (12-174)||(36408559-36408721)
chr8 (12-182)||(2729193-2729363)
chr8 (56-163)||(3435288-3435397)
chr8 (14-150)||(42230971-42231105)
chr8 (89-159)||(40470567-40470637)
chr8 (97-182)||(10397122-10397207)
chr8 (12-49)||(40470472-40470509)
[»] scaffold0041 (1 HSPs)
scaffold0041 (12-167)||(52940-53095)
[»] scaffold0154 (1 HSPs)
scaffold0154 (12-163)||(31499-31650)
[»] scaffold0502 (1 HSPs)
scaffold0502 (12-182)||(5230-5400)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 204 - 441
Target Start/End: Original strand, 40059369 - 40059608
Alignment:
Q  204 gcccaggtgcaaatgcgcgaccatgtctataaaaagaaaatttcaacagagttttaagtgtggaaa--gacaaacctagagagttcaaaagaaggaacct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  40059369 gcccaggtgcaaatgcgcgaccatgtctataaaaagaaaatttcaacagagttttaagtgtggaaaaagacaaacctagagagttcaaaagaaggaacct 40059468  T
Q  302 tttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaactcatttaacaaaagttacaataaaccac 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  40059469 tttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaactcatttaacaaaaggcacaataaaccac 40059568  T
Q  402 tttatatttttattttcataattaacatatcaggaataca 441  Q
    || |||||||||||||||||||||||||||||||||||||    
T  40059569 ttaatatttttattttcataattaacatatcaggaataca 40059608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 20129480 - 20129290
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20129480 agagagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 20129381  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  20129380 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 34407281 - 34407472
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  34407281 agagagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 34407380  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| |||||||||||||    
T  34407381 taatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 34407472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 428 - 590
Target Start/End: Original strand, 40059631 - 40059796
Alignment:
Q  428 atatcaggaatacacatctattgttttattttcgcaattcatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt 527  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059631 atatcaggaatacacatctattgttttattttcgcaattaatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt 40059730  T
Q  528 taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaa---taggggataaagtga 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  40059731 taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaatattaggggataaagtga 40059796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 26439276 - 26439466
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26439276 agagagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 26439375  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  26439376 taatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 13012358 - 13012168
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  13012358 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgt 13012259  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||| |||||| |||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  13012258 taatgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 13012168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 25930878 - 25930688
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  25930878 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgt 25930779  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||| | ||||||| ||||||||||||||||||    
T  25930778 taatgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 47500943 - 47500753
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||||    
T  47500943 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgt 47500844  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  47500843 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 43356074 - 43355883
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  43356074 agagagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 43355975  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || | ||| || ||||| ||||||| |||||||||||||    
T  43355974 taatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatgc 43355883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 29319702 - 29319893
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||| |||||  |||||| |||||||||||||| |||||||||||||||||||||||||    
T  29319702 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgt 29319801  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||| ||| |||||||||||||||||||    
T  29319802 taatgggattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatgc 29319893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 36382343 - 36382528
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  36382343 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttc-ttttgtaaatgtgt 36382441  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    |||||| ||||| |||||||| ||||||||||||||||| |||||||||||| || |||||||| ||||||| ||||||||||||||    
T  36382442 taatggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 43143581 - 43143771
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43143581 agagagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 43143680  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |  |||||  |||||||||||    
T  43143681 taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatg 43143771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 42333773 - 42333936
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||  | ||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  42333773 agagagatgaacttatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 42333872  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  42333873 taattggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgg 42333936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 17511230 - 17511417
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt-ccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtg 110  Q
    ||||||||||| |  |||||| |||||||||||||||| ||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||    
T  17511230 agagagatgaaccgatcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtg 17511329  T
Q  111 ttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||| || ||||||| |||||||||||||||    
T  17511330 ttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgccagg-gtcgccatacggtagaaccgccc 17511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 3292893 - 3293056
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  3292893 agagagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 3292992  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||||||| || ||||||||    
T  3292993 taattggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccgg 3293056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 30216739 - 30216909
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |||||    
T  30216739 agagagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 30216838  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    ||||  |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  30216839 taattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 30216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 6690232 - 6690402
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||| ||| | |||||||||||||||||||||||| | |||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  6690232 agagagacgaacccgtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgt 6690331  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||| ||||||    
T  6690332 taattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 6690402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 40529185 - 40528996
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||||||||    
T  40529185 agagatatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgt 40529086  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggc--cgcccggagtcgccacacggtagaaccgccc 199  Q
    ||||| | |||| |||||||| ||||||||||||||||||||||||| ||||||| |  ||||| | ||||||| |||||||||||||||    
T  40529085 taatgagtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 48989498 - 48989330
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  48989498 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgt 48989399  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcg 180  Q
    |||||| |||||| |||| || |||||||||||||||||||||||| |||||  | |||||||||||||    
T  48989398 taatggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcg 48989330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 50205074 - 50205237
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||| |||||    
T  50205074 agagtgatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgt 50205173  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||| ||| || ||||||||    
T  50205174 taattggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgg 50205237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 10352881 - 10353068
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | || | ||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  10352881 agagagatgaatccgacactggtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgt 10352980  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    |||||| ||||| ||||| |||||||||||||||||||||||| |||||||| || ||||| || ||||||  |||||  ||||||||    
T  10352981 taatggactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 44156821 - 44156670
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||| ||||| |||||||||||||| |||||    
T  44156821 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgt 44156722  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||| ||||||||||||| |||||||||||||||||||||| | ||||||||    
T  44156721 taattggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgg 44156670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 29995982 - 29996143
Alignment:
Q  14 agagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgtta 113  Q
    ||||||||| | |||||||||||||| ||||||||||| ||| |||||| ||||  | ||||||||||||||||||||||||||||| ||||||||||||    
T  29995982 agagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgtta 29996081  T
Q  114 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  29996082 atggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgg 29996143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 6235690 - 6235515
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  6235690 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgt 6235591  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    |||||| |||||||            ||||||||||||||| |||||||||  || |||||| || |||||| |||||||||||||||    
T  6235590 taatggacttttgg------------gtgcaaaaattatcggtcgagcccgagcgaccgcccagaatcgccatacggtagaaccgccc 6235515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 30077628 - 30077790
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | || ||||||||||||||||||| ||||||||||||  |||| | ||||||||||||| ||||||||||||||||||||||||||    
T  30077628 agagagatgaatccggcactagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgt 30077727  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccg 174  Q
    |||||  ||||| ||||| ||||||||||||||| |||||||| ||||| || || |||||||    
T  30077728 taatgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccg 30077790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 35546123 - 35545977
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||||||||||||||||||||||  ||||| |||| ||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  35546123 agagagatgaacccatcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgt 35546024  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 158  Q
    |||| ||||||||||||| |||| ||| ||||||||| |||||||||    
T  35546023 taattggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 28877247 - 28877396
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| ||||||||||||||||| |||  ||||    
T  28877247 agagagatgaacccatcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgt 28877346  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagccc 161  Q
    ||||  |||||| |||||| |||||||||||||||||||||||| |||||    
T  28877347 taattagcttttaggttgaatctaatgtgcaaaaattatcgatctagccc 28877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 26448206 - 26448053
Alignment:
Q  28 caatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggt 127  Q
    |||||||||||||||||||||||| | ||||||||  || ||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  26448206 caatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggt 26448108  T
Q  128 tgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |   | ||||||||||||||||||||||||| |||||||  ||| ||||||||||    
T  26448107 tagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgcc 26448053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 1817887 - 1817752
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | |||||||||| ||||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||||||||| ||||||| |    
T  1817887 agagagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtat 1817788  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaat 147  Q
    |||||| ||||||| |||  ||||||||||||||||    
T  1817787 taatggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 48130063 - 48129985
Alignment:
Q  85 cccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgg 48129985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 13392878 - 13392970
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgta 104  Q
    ||||||||||| |  ||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  13392878 agagagatgaatcattcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 13396017 - 13396109
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgta 104  Q
    ||||||||||| |  ||||||||||||||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  13396017 agagagatgaatcattcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 30110084 - 30109958
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||| ||||||| | |||||| |||  | |||||||||||||||||||| ||||||||||| |||| || ||| |||||||||||||||||||||||    
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcga 30109985  T
Q  154 tcgagcccggacggccgcccggagtcg 180  Q
    ||||| |||| || ||| |||| ||||    
T  30109984 tcgagtccgggcgaccgtccggggtcg 30109958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 27363446 - 27363344
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccg 196  Q
    ||||||||| ||||||||||||||||||||||| | ||||| ||||||||   |||||||||||||| || |||||||  ||||||| |||||| |||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  197 ccc 199  Q
    |||    
T  27363346 ccc 27363344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 45194276 - 45194195
Alignment:
Q  82 ttgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||  |||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||    
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgg 45194195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  89 aatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcga 157  Q
    ||||||| |||||| || ||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 7769369 - 7769308
Alignment:
Q  141 caaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||||| || ||||| || ||||||  |||||  |||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatg 7769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 30110145 - 30110108
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  30110145 agagagatgaacccgtcaatagtgtgctaaataaaatt 30110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 48130148 - 48130111
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  48130148 agagagatgaacccgtcaatagtgtgctaaataaaatt 48130111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 41251631 - 41251821
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41251631 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 41251730  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||||||||    
T  41251731 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 17445038 - 17445226
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17445038 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 17445137  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| ||| || |||||||  ||||||||||||||||||||||||||    
T  17445138 taatgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 6403801 - 6403991
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  6403801 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 6403900  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||  ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  6403901 taatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 6403991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 42440156 - 42439966
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42440156 agagacatgaatccgtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 42440057  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||    
T  42440056 taatgggcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 35962885 - 35962694
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||||    
T  35962885 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgt 35962786  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||||||||    
T  35962785 taataagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatgc 35962694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 18981786 - 18981597
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |    
T  18981786 agagacatgaacccgtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttt 18981687  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  18981686 taatggacttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccgg-gtcgccatacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 31581619 - 31581805
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31581619 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 31581718  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||||| || || |||||||  ||||||| || |||||||||||    
T  31581719 taatgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgccatacagtagaaccgcc 31581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 32127138 - 32127328
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  32127138 agagacatgaacccgtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgt 32127237  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||||||| |||| ||||||||||||||||| |||||||||||| || |||||||| ||||||| ||| ||||||||||||||    
T  32127238 taatgagcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatg 32127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 2958131 - 2958287
Alignment:
Q  45 aaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaa 144  Q
    |||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  145 aattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 16405770 - 16405580
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  16405770 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgt 16405671  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| |||||||| || |||||| | ||| ||| | ||||||||||||||||    
T  16405670 taatgagcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatg 16405580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 45418753 - 45418583
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  45418753 agagagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 45418654  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| |||||||||||||  ||||||| |||||||||||||||||||||||| || |||||||| ||||||    
T  45418653 taattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45418583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 771165 - 771006
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaat 115  Q
    ||||||| | ||||||| ||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 771066  T
Q  116 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||| || ||||||||    
T  771065 gggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgg 771006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 12756834 - 12756985
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  12756834 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgt 12756933  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||| |||||    
T  12756934 taattggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccgg 12756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 44084600 - 44084770
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||  |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  44084600 agagagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgt 44084699  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||||  ||||||| ||| || |||||||||||||||||||||||||||||| || | |||||| ||||||    
T  44084700 taatgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 44084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 8147518 - 8147351
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataatttt-cagattgcccaaatttttctttttgtaaatgtgttaa 114  Q
    ||||||| | |||||||||||| ||||||||||||| ||| |||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaa 8147419  T
Q  115 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    | | |||||| |||| |||||||||||||| |||||||||||||||||| || |||||||| ||||||    
T  8147418 ttgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 8147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 8059330 - 8059478
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||| ||||||||||||||||||| ||||| ||||  |||||| |||||||| |||| |||||||||||||||||||| |||||    
T  8059330 agagaaatgaacccgtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgt 8059429  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 160  Q
    |||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  8059430 taattggcttttgggttgactctaatgtgcaaaaattatcgattgagcc 8059478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 2286018 - 2285887
Alignment:
Q  26 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 125  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||| ||| |||||||||||||| | ||||| |    
T  2286018 gtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttg 2285919  T
Q  126 gttgagtctaatgtgcaaaaattatcgatcga 157  Q
    ||||  | ||||||||||||||||||||||||    
T  2285918 gttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 26162699 - 26162847
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||| ||||||||||||   ||| ||||||||||  || ||| |||||| ||||||||||||||||||||||||||| |||||    
T  26162699 agagagatgaacccgtcaataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgt 26162795  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||  ||||||||    
T  26162796 taatgggtttttgggttgaatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 4555250 - 4555354
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||||||||||| ||||||||||||  ||||||| |||||||||||||| |||||||| | |||||||||||| || | ||||||||||||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcga 4555349  T
Q  154 tcgag 158  Q
    |||||    
T  4555350 tcgag 4555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 26238065 - 26237957
Alignment:
Q  74 ttttcagatt-gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcc 172  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||  |||||| |||||||| |||||||||||||||| || |||||    
T  26238065 ttttcagatttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcc 26237967  T
Q  173 cggagtcgcc 182  Q
    ||| ||||||    
T  26237966 cggggtcgcc 26237957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 7072589 - 7072710
Alignment:
Q  56 cctatttacgtgtgataattttcaga--ttgcccaaatttttctttttgtaaatgtg--ttaatgggcttttgggttgagtctaatgtgcaaaaattatc 151  Q
    |||||||||||| || ||||||||||  ||| ||||  |||||||||| ||| ||||  |||||||||||||||||||||| ||||||  ||||||||||    
T  7072589 cctatttacgtgcgagaattttcagaatttgtccaatattttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatc 7072688  T
Q  152 gatcgagcccggacggccgccc 173  Q
    |||||||||||| || ||||||    
T  7072689 gatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 34906024 - 34905964
Alignment:
Q  107 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgg 167  Q
    ||||||||||||||||||||||  |  ||||||||||||||||||||||||||||| ||||    
T  34906024 tgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccgaacgg 34905964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 22968441 - 22968632
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22968441 agagagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgt 22968540  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  22968541 taatgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatgc 22968632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 6269427 - 6269613
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 6269526  T
Q  116 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||  |||| ||||||||||||||||||||    
T  6269527 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 19390316 - 19390126
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19390316 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 19390217  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||||||    
T  19390216 taatagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 39771960 - 39771770
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  39771960 agagagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 39771861  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  39771860 taatgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 39771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 34084119 - 34084305
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  34084119 agagagatgaacccatcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgt 34084218  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    |||||| ||||| |||||| | ||||||||||||||||||||||||| |||| || |||||||| ||||||| ||||||||||||||    
T  34084219 taatggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 11018209 - 11018399
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||| ||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  11018209 agagagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 11018308  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||  |||||  |||||||||||    
T  11018309 taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatg 11018399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 45183151 - 45182981
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||||||||| |||||    
T  45183151 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 45183052  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||| ||||||    
T  45183051 taattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 45182981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 6930891 - 6931061
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  6930891 agagagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgt 6930990  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| |||||||||||||  ||||||| |||||||||||||||||||||||| || ||| |||| ||||||    
T  6930991 taattggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 6931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 27935348 - 27935197
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||| |||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  27935348 agagagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgt 27935249  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  27935248 taatgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgg 27935197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 40081738 - 40081922
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||| ||||| |||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  40081738 agagagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgt 40081836  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||||||| || ||  || ||||||||| |||||||||||||||    
T  40081837 taatgagctttt-ggttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc-tccagagtcgccatacggtagaaccgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 6503566 - 6503758
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||| ||||||||||||||| ||| |||||||||| | ||||| ||||||||||||||  |||||||||||||||||| ||||     
T  6503566 agagagatgaacccatcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgc 6503665  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgcg 204  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||| ||||||  |||||  |||||||||||||    
T  6503666 taattggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatgcg 6503758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 33041123 - 33040953
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||  ||||||||||||||||||| |||||    
T  33041123 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgt 33041024  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    ||||  |||||||||||| ||||||| ||||||||||||| ||||||||||  || |||||||| ||||||    
T  33041023 taattagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgcc 33040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 19565517 - 19565661
Alignment:
Q  31 tagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttga 130  Q
    ||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||     
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgg 19565616  T
Q  131 gtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||||||||||||||||||||||| || ||||| || ||||||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgg 19565661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 45336044 - 45335883
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | || |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  45336044 agagagatgaatccggcactagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgt 45335945  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccg 174  Q
    |||| | ||||| ||||| |||||||||| ||||||||||||| ||| |||| || |||||||    
T  45335944 taat-gactttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccg 45335883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 35514432 - 35514266
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||| |||||||||||| |||||||||| || |||| |||||||| |||| |||||||||||||||||    |||||    
T  35514432 agagagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttg----tgtgt 35514337  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||||| |||||||||||  |||| | ||| |||||||||||||||||||||||| ||| |||| ||||||    
T  35514336 taatggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgcc 35514266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 5135397 - 5135284
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    |||||||  |||||| ||||||| ||||  | |||||||||||||||||||| |||||||||| |||||| ||||| ||||||||| ||||||| |||||    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcga 5135298  T
Q  154 tcgagcccggacgg 167  Q
    ||||||| ||||||    
T  5135297 tcgagcctggacgg 5135284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 52999745 - 52999838
Alignment:
Q  279 agagagttcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaac 373  Q
    |||||| |||||| | ||||||||| ||| |||||||  ||||||| | || | |||||||| || |||||||||||||||||||||||||||||    
T  52999745 agagagatcaaaatagggaaccttt-aggaaatcaatgggctaaagatcgaggacttttgggataaattctaaggtttggaaacaccattcaaac 52999838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 22922214 - 22922141
Alignment:
Q  125 ggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    |||||||| |||||||||||||| ||||||||||||||  || ||||||||  |||||| ||||| ||||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 22922265 - 22922215
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctattt 62  Q
    ||||||||||| | |||||||||||| ||||||||||||||||| ||||||    
T  22922265 agagagatgaacccgtcaatagtgtgttaaataaaattccaagatctattt 22922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 5135458 - 5135421
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  5135458 agagagatgaacccgtcaatagtgtgctaaataaaatt 5135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 20631886 - 20631981
Alignment:
Q  273 aaacctagagagttcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatgg-cttttggggtatattctaaggtttggaaacaccatt 368  Q
    |||||||||||| |||||||| |||||| |||||| ||| |||  ||||| | |||| ||  |||||||||| |||||| |||||||||||| ||||    
T  20631886 aaacctagagagatcaaaagagggaacc-tttaggaaatgaatgggctaatggttgagggatttttggggtaaattctagggtttggaaacatcatt 20631981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 18012 - 17822
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  18012 agagagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 17913  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||    
T  17912 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatg 17822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 9e-87; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 36293618 - 36293808
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36293618 agagagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 36293717  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||    
T  36293718 taatgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatg 36293808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 39434866 - 39434676
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  39434866 agagagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgt 39434767  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||    
T  39434766 taatgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 10034097 - 10033910
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10034097 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 10033998  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || |||| ||||||| |||||||||||||||    
T  10033997 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 13818147 - 13817960
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||  | ||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13818147 agagagatgagcccgtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 13818048  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||| |||||||||||||||    
T  13818047 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 26283315 - 26283505
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26283315 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgt 26283414  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||  ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||  ||||| ||||||| ||||||||||||    
T  26283415 taatgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatg 26283505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 16155167 - 16155016
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  16155167 agagagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgt 16155068  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155067 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 16155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 39657503 - 39657693
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39657503 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 39657602  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| ||| | || ||||||| |  |||||||||||||||    
T  39657603 taatgagcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtagaaccgcccatg 39657693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 1776377 - 1776559
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaat 115  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaat 1776476  T
Q  116 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    || ||||| |||||| | |||||| ||||||||||||||||||||||| || |||||||| |||| || ||||||||||||||    
T  1776477 ggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 12278857 - 12279020
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  12278857 agagagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 12278956  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||| |||| || ||||||||    
T  12278957 taattggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgg 12279020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 17332548 - 17332718
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  17332548 agagagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgt 17332647  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||  ||||||| ||||||    
T  17332648 taattggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgcc 17332718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 16333873 - 16334013
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16333873 agagacatgaatccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 16333972  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcg 152  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  16333973 taatgggcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 19986106 - 19985926
Alignment:
Q  15 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaa 114  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaa 19986007  T
Q  115 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaacc 195  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||  |||| || |||||| ||||    
T  19986006 tggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcgtcatacggtaaaacc 19985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 33430491 - 33430340
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  33430491 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 33430392  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  33430391 taattggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgg 33430340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 31680537 - 31680367
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||    
T  31680537 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 31680438  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| |||||||| | |||||||||||||||||||||| || |||||||| ||||||    
T  31680437 taattggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 31680367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 37254811 - 37254620
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  37254811 agagagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 37254712  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    |||| | ||||||||||| |||||||||||||||||||||||||||||| || || ||||| || ||||||   ||||  ||||||||||||    
T  37254711 taattgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgcccatgc 37254620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 3155647 - 3155818
Alignment:
Q  31 tagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttga 130  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||    
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttga 3155746  T
Q  131 gtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||| |||||||||||||||| |||||||||||  || ||||||||  |||||| ||| ||||||||||||||    
T  3155747 gtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 43069047 - 43068894
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | |||||||||||||||||||||||| |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  43069047 agagagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgt 43068948  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggac 165  Q
    |||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  43068947 taatggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccggac 43068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 31501728 - 31501864
Alignment:
Q  27 tcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttggg 126  Q
    ||||||||||||||||||||||| | |||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  31501728 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 31501827  T
Q  127 ttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||| |||||||||||||||||||||||||||||||||    
T  31501828 ttgggtctaatgtgcaaaaattatcgatcgagcccgg 31501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 36291541 - 36291373
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||| ||||||||||||  ||||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||    
T  36291541 agagagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgt 36291442  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcg 180  Q
    |||||  ||||| ||||   ||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  36291441 taatgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcg 36291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 28801415 - 28801309
Alignment:
Q  56 cctatttacgtgtgataattttcagattg--cccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||| ||||||| |||||||| |||   ||||||||||||||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcga 28801316  T
Q  154 tcgagcc 160  Q
    |||||||    
T  28801315 tcgagcc 28801309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 3158854 - 3158955
Alignment:
Q  271 acaaacctagagagttcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattca 370  Q
    ||||||||||||||  |||||||  ||||||||  ||| ||||||| ||||||| |||| | ||||||| ||| ||| || |||||| ||||||||||||    
T  3158854 acaaacctagagagaacaaaagagtgaacctttg-gggtatcaataagctaaaggttgaggacttttggagtagattttagggtttgaaaacaccattca 3158952  T
Q  371 aac 373  Q
    |||    
T  3158953 aac 3158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 163
Target Start/End: Complemental strand, 202724 - 202658
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||| | ||| ||||||||||||||||||    ||||||| || ||||||||||||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgg 202658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 373
Target Start/End: Original strand, 27908254 - 27908338
Alignment:
Q  288 aaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacaccattcaaac 373  Q
    |||||| ||||||||| ||||||||| || ||||||| |||| || ||||||| ||  ||||| |||||  |||||||||||||||    
T  27908254 aaaagagggaaccttt-agggaatcagtaggctaaaggttgagggtttttgggataggttctagggtttcaaaacaccattcaaac 27908338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 28801476 - 28801439
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  28801476 agagagatgaacctgtcaatagtgagctaaataaaatt 28801439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 14777104 - 14777294
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14777104 agagcgatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 14777203  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||| ||||||||||||||||||||    
T  14777204 taatgagcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 5555657 - 5555467
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||| ||    
T  5555657 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgt 5555558  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||    
T  5555557 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 3114093 - 3114283
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3114093 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 3114192  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||| ||| ||||||||||||||||||    
T  3114193 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatg 3114283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 8394295 - 8394109
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  8394295 agagagataaacccgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgt 8394196  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||    
T  8394195 taatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 36630986 - 36630800
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36630986 agagagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 36630887  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||| || ||| |||| ||||||| ||||||||||||||    
T  36630886 taatggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 37002141 - 37002311
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  37002141 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 37002240  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| | ||||||| ||| |||||||||||||||||||||||||||| ||| ||| |||||||| ||||||    
T  37002241 taattgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgcc 37002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 40920000 - 40920155
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  40920000 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgt 40920099  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgg 167  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  40920100 taattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacgg 40920155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 34389053 - 34389223
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||| ||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  34389053 agagagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 34389152  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    ||||  |||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  34389153 taattagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 34389223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 35090338 - 35090177
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  35090338 agagagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgt 35090239  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgccc 173  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||||| || ||||||    
T  35090238 taattggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 8867728 - 8867898
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||| |||||| | |||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  8867728 agagtgatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtat 8867827  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||| ||| ||||||| ||||||||||||||||||||||||| || |||||||| ||||||    
T  8867828 taattggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 38638237 - 38638388
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaat 115  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 38638336  T
Q  116 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgg 167  Q
     | |||||||||||  |||||||||||||||||||| ||||||| |||||||    
T  38638337 tgacttttgggttggatctaatgtgcaaaaattatcaatcgagctcggacgg 38638388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 43184465 - 43184635
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||    
T  43184465 agagagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgt 43184564  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| |||||||||||| ||||| ||| | |||||||||||||||||||||  || ||||||||| |||||    
T  43184565 taattggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgcc 43184635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 26624916 - 26624752
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  26624916 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 26624817  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcg-atcgagcccggacggccgcccgg 175  Q
    ||||   ||||||| ||| ||||||| |||||||||||||| ||||||||| | || ||||||||    
T  26624816 taattaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccgg 26624752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 33685720 - 33685584
Alignment:
Q  26 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 125  Q
    ||||||||||||||||||||||||   |||| ||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33685720 gtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgg 33685621  T
Q  126 gttgagtctaatgtgcaaaaattatcgatcgagcccg 162  Q
    |||| || |||||||||||||||||||||||||||||    
T  33685620 gttgggtttaatgtgcaaaaattatcgatcgagcccg 33685584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 36658351 - 36658200
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||| | | |||    
T  36658351 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgt 36658252  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||| ||||||| ||||| ||| |||||||||||||||||||||||| ||||    
T  36658251 taattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccgg 36658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 7002895 - 7002725
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||  ||||||||| ||||||| |||||| |||||| |||||||||| ||||||||  |||||    
T  7002895 agagagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgt 7002796  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| || ||||||  ||||||  |||||||||||||| || |||| ||| ||||||    
T  7002795 taattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgcc 7002725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 7048766 - 7048596
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||  ||||||||| ||||||| |||||| |||||| |||||||||| ||||||||  |||||    
T  7048766 agagagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgt 7048667  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| || ||||||  ||||||  |||||||||||||| || |||| ||| ||||||    
T  7048666 taattggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgcc 7048596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 10868514 - 10868583
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggctttt 123  Q
    ||||||| || |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10868514 cctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 26502885 - 26502797
Alignment:
Q  107 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaacc 195  Q
    ||||||||||||||||||||||| |  |||| ||||||||   |||||||||||||| || | ||| || ||||||||||||| |||||    
T  26502885 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 26589829 - 26589917
Alignment:
Q  107 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaacc 195  Q
    ||||||||||||||||||||||| |  |||| ||||||||   |||||||||||||| || | ||| || ||||||||||||| |||||    
T  26589829 tgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtggaacc 26589917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 26144425 - 26144232
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26144425 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgt 26144326  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgcgc 205  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||||    
T  26144325 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgcgc 26144232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 7433615 - 7433425
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||||||||||  |||||| |||||| |||||||||||| ||||||||||||||||||||    
T  7433615 agagacatgaacccgtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgt 7433516  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||| || |||| ||||||||||||||||||    
T  7433515 taatgggcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 32982053 - 32982236
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||| |||    
T  32982053 agagagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgt 32982152  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaacc 195  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| |||||  || |||||||| ||||||| |||||||||||    
T  32982153 taatgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 42310938 - 42311125
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||| || |||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42310938 agagagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 42311037  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  || | || ||||||| |||||||||||||||    
T  42311038 taacgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 321374 - 321536
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||| |||| ||||||||||||| |||||||||| | | ||| |||||||||||||||||||||||||||||||||| |||||    
T  321374 agagagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgt 321473  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccg 174  Q
    |||||| |||||||||||  |||||||  |||||||||||||||||||||||||| |||||||    
T  321474 taatggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccg 321536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 3829153 - 3829004
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  3829153 agagagatgaacccgtcaatagtgtgctaaataaaattcca-gacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgt 3829055  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 162  Q
    |||||  ||||||||||| || |||||||||||||||||||||||| ||||    
T  3829054 taatgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccg 3829004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 35907722 - 35907531
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||   ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||| |||||||||||||| |||      
T  35907722 agagagatgaactcgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtac 35907623  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||  ||||||   ||||  ||||||||||||    
T  35907622 taattggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccatgc 35907531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 17445479 - 17445332
Alignment:
Q  16 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaat 115  Q
    ||||||| | ||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 17445380  T
Q  116 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
     | |||||||||||  |||||||| |||||||||| |||| |||||||    
T  17445379 tgacttttgggttggatctaatgtacaaaaattattgatccagcccgg 17445332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 23313345 - 23313218
Alignment:
Q  76 ttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccggacggccgcccg 174  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||  |||||||||||||||||| |||| ||| ||||||||||| |  |||||||    
T  23313345 ttcagattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T
Q  175 gagtcgccacacggtagaaccgcccatg 202  Q
       |||||| ||||||||||||||||||    
T  23313245 agatcgccatacggtagaaccgcccatg 23313218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 41972314 - 41972458
Alignment:
Q  56 cctatttacgtgtgataattttcagattgc--ccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||| ||||||| ||||||||||||    |||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  154 tcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    ||||||| || || |||||||| |||||   ||||| |||||||||    
T  41972414 tcgagccagg-cgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 33489815 - 33489687
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||| ||||||| ||||||||||||  || |||||||||||||| |||| ||||||||||||||||| | ||||||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  154 tcgagcccggacggccgcccggagtcgcc 182  Q
     | | |||| ||| ||| |||| ||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgcc 33489687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 31649508 - 31649614
Alignment:
Q  267 aaagacaaacctagagagttcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttgg-ggtatattctaaggtttggaaacacc 365  Q
    |||| |||||||| ||||  ||||||| |||||| || ||| |||||||| ||||||| |||| | ||||||| |||| |||||| ||||||||||||||    
T  31649508 aaaggcaaacctaaagagaacaaaagagggaaccatt-aggaaatcaataggctaaaggttgaggacttttggaggtaaattctagggtttggaaacacc 31649606  T
Q  366 attcaaac 373  Q
    ||||||||    
T  31649607 attcaaac 31649614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 35951427 - 35951496
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacg 166  Q
    ||||||| | |||||||||||||| |||||||    ||||||| ||||||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccggacg 35951496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 48901203 - 48901253
Alignment:
Q  113 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| |||||    
T  48901203 aatgggcttttgggttgggcctaatgtgcataaattatcgatcgaccccgg 48901253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 13197904 - 13198009
Alignment:
Q  267 aaagacaaacctagagagttcaaaagaaggaaccttttagggaatcaatatgctaaagcttgatggcttttggggtatattctaaggtttggaaacacca 366  Q
    |||| |||||||| ||||  ||||||| ||||||||||| ||||| ||||  |||||| |||| || |||||||  | ||| || | |||||||||||||    
T  13197904 aaaggcaaacctatagagaccaaaagagggaaccttttaaggaataaataaactaaagattga-ggattttgggagagattataggatttggaaacacca 13198002  T
Q  367 ttcaaac 373  Q
    |||||||    
T  13198003 ttcaaac 13198009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 33489876 - 33489839
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  33489876 agagagatgaacccgtcaatagtgtgctaaataaaatt 33489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 480454 - 480645
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  480454 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgt 480553  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||    
T  480554 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgc 480645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 398787 - 398597
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  398787 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgt 398688  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||    
T  398687 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 34948755 - 34948946
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  34948755 agagacatgaacccgtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 34948854  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatgc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || ||||||| |||||||||||||||||||    
T  34948855 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatgc 34948946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 13837991 - 13837801
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13837991 agagacatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgt 13837892  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    | ||| |||||||||||||||||||||| ||||||||||||||||| ||||  ||  ||||||| ||||||| ||||||||||||||||||    
T  13837891 tgatgtgcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 28996900 - 28996730
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  28996900 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 28996801  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || |||||||| ||||||    
T  28996800 taattgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgcc 28996730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 18339276 - 18339106
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||| |||||    
T  18339276 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgt 18339177  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||| | ||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||    
T  18339176 taattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 33229333 - 33229484
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | ||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  33229333 agagagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgt 33229432  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||||| ||||||||||| ||||||||| ||||||| |||||||||||||||    
T  33229433 taatggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgg 33229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 29743453 - 29743302
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | || ||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||||    
T  29743453 agagagatgaatccggcactagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgt 29743354  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||||  ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  29743353 taatgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgg 29743302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 31028435 - 31028512
Alignment:
Q  86 ccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||||||||| ||||    
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgg 31028512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 24697899 - 24697965
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgg 24697965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 24695572 - 24695515
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgat 154  Q
    ||||||||| ||||||||||||||||||||||||| |||||||  |||||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgat 24695515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 24072623 - 24072576
Alignment:
Q  107 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgat 154  Q
    |||||||||||| |||||||||   |||||||||||||||||||||||    
T  24072623 tgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 3050154 - 3050098
Alignment:
Q  107 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    ||||||||||||||||| ||||| |   |||||||||||||||| ||| ||||||||    
T  3050154 tgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgg 3050098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 692 - 502
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  692 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgt 593  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||  |||| ||||||| ||||||||||||    
T  592 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatg 502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 29728383 - 29728570
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  29728383 agagagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgt 29728482  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgccc 199  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||| ||| || ||| |||| ||||||| |||||||||||||||    
T  29728483 taatgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 39914684 - 39914495
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||| |||||||||    
T  39914684 agagagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgt 39914586  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||| |||||    
T  39914585 taatgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 16788022 - 16788185
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||| |||||    
T  16788022 agagagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgt 16788121  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccgg 175  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  16788122 taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgg 16788185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 3648793 - 3648978
Alignment:
Q  14 agagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgtta 113  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3648793 agagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgtta 3648892  T
Q  114 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccg-cccggagtcgccacacggtagaaccgccc 199  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || | | |||||| |||||| |||||||||||||||    
T  3648893 atgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccgga-tcgccatacggtagaaccgccc 3648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 15838441 - 15838270
Alignment:
Q  26 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 125  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |    
T  15838441 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttc-ttttgtaaatgtgttaatggactttttg 15838343  T
Q  126 gttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcc 198  Q
    ||||||| |||||||||||||||||| |||||||||||  | |||||||| ||||||| ||||||||||||||    
T  15838342 gttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgcc 15838270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 34136822 - 34137012
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||| ||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  34136822 agagagatgaacccatcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 34136921  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgccacacggtagaaccgcccatg 202  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||| |||||  |||| ||||||    
T  34136922 taattgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatg 34137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 4404178 - 4404008
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  ||||| ||||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| | |||    
T  4404178 agagagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgt 4404079  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||    
T  4404078 taattggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgcc 4404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 23402278 - 23402108
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||| ||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  23402278 agagagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 23402179  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||||||||| ||||||| |||||| |||||||||||||||||| || |||||||| ||||||    
T  23402178 taattggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgcc 23402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 9877390 - 9877242
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    |||||||||||  || |||||||||||||||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||    
T  9877390 agagagatgaatttgacaatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgt 9877291  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 160  Q
    |||| | ||||||||||  ||||||||||||||||||||| ||||||||    
T  9877290 taattgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

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Target: chr8; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 36408721 - 36408559
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | | |||||||||| ||||||||||||  |||||||||  ||||| | |||||||| |||||| ||| ||||||||||||||||||||    
T  36408721 agagagatgaatccggcaatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgt 36408622  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccg 174  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||| || |||||||    
T  36408621 taatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 36408559  T

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Target: chr8; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 2729193 - 2729363
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| |  |||||||||||||||||||||||   |||||||||| ||| ||| | |||||| |||||| |||  ||||||||| ||| |||||    
T  2729193 agagagatgaatccatcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgt 2729292  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||||||||||||| |||  | ||||||| |||||||||||||||||||||| || |||||||| ||||||    
T  2729293 taatgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgcc 2729363  T

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Target: chr8; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 3435397 - 3435288
Alignment:
Q  56 cctatttacgtgtgataattttcagatt--gcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 153  Q
    ||||||| ||| ||| ||||||||||||  |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  154 tcgagcccgg 163  Q
    || |||||||    
T  3435297 tcaagcccgg 3435288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 42231105 - 42230971
Alignment:
Q  14 agagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgtta 113  Q
    ||||||||| | |||||||||||||||||||||||||  |||||||||| | | ||| |||||||| |||||||||||||||||||||||||  ||||||    
T  42231105 agagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgtta 42231008  T
Q  114 atgggcttttgggttgagtctaatgtgcaaaaattat 150  Q
    |||| |||||| ||||  | |||||||||||||||||    
T  42231007 atggacttttgagttggatttaatgtgcaaaaattat 42230971  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  89 aatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 159  Q
    ||||||| ||||| ||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

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Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 10397122 - 10397207
Alignment:
Q  97 tttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| |||||||| ||   |||||||||||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgcc 10397207  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 40470472 - 40470509
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaatt 49  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  40470472 agagagatgaacccgtcaatagtgtgctaaataaaatt 40470509  T

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Target: scaffold0041 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 53095 - 52940
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  53095 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgt 52996  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgg 167  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  52995 taattggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacgg 52940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 31650 - 31499
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| ||||||||||||||| |||||||||| | |||||||||| || |||| ||||||||||||| |||||||||||||||||||| |||||    
T  31650 agagagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgt 31551  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 163  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  31550 taatgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgg 31499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 5400 - 5230
Alignment:
Q  12 agagagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgataattttcagattgcccaaatttttctttttgtaaatgtgt 111  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||| |||||||||||||| |||||    
T  5400 agagagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgt 5301  T
Q  112 taatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacggccgcccggagtcgcc 182  Q
    |||| ||||||| | ||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||    
T  5300 taattggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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