View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14015_low_5 (Length: 562)
Name: NF14015_low_5
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14015_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 55271583 - 55271907
Alignment:
| Q |
1 |
acagctgtgttgagcaacatatatgaaatatgaaggtaacttgtgtccgaacaaaaagtgtgtatttacgtgtgaaagtataaaaatagaattgataaaa |
100 |
Q |
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| T |
55271583 |
acagttgtgttgagcaacatatatgaaatatgaaggtaacttgtgtccgaacaaaaagtgtgtatttacgtgtgaaagtataaaaatagaattgataaaa |
55271682 |
T |
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| Q |
101 |
tgcagtgaacaattaaatgaataagtgagaaatgcaagtacctcgtcggctttggttagttgaagtttacaacgagtgcagtagatgagattgtgagtgt |
200 |
Q |
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| T |
55271683 |
tgcagtgaacaattaaatgaataagtgagaaatgcaagtacctcgtcagctttggttagttgaagtttacaacgagtgcagtagatgagattgtgagtgt |
55271782 |
T |
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| Q |
201 |
ctttgagctgtccttgcttacaaagaggacaccaaatttgttgtccaaatgtctatgaattaagaattaagaattaatatggagaatgaaatgagaaaga |
300 |
Q |
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| T |
55271783 |
ctttgagctgtccttgcttacaaagaggacaccaaatttgttctccaaatgtctatgaattaagaattaagaattaatttggagaatgaaatgagaaaga |
55271882 |
T |
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| Q |
301 |
gagtatgaatattgttgaataaaaa |
325 |
Q |
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| T |
55271883 |
gagtataaatattgttgaataaaaa |
55271907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 387 - 546
Target Start/End: Original strand, 55271976 - 55272135
Alignment:
| Q |
387 |
gcatatggtcataaacagcacgagccaagtagtgatcaacttcatcttcccaagtatcaatatgagaatcgaggtcttgataaaataagttttgcatttc |
486 |
Q |
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| T |
55271976 |
gcatatggtcataaacagcacgagccaagtagtgatcaacttcatcttcccaagtatcaatatgagaatcgaggtcttgataaaataagttttgcatttc |
55272075 |
T |
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| Q |
487 |
aagaagaatgtcttggcaatcaccctcatgagctgctttgaggtcatcgttccataaaag |
546 |
Q |
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| T |
55272076 |
aagaagaatgtcttggcaatcaccctcatgagctgctttgaggtcatcgttccataaaag |
55272135 |
T |
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