View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14015_low_6 (Length: 476)

Name: NF14015_low_6
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14015_low_6
NF14015_low_6
[»] chr3 (25 HSPs)
chr3 (14-460)||(34478053-34478499)
chr3 (53-340)||(27617236-27617525)
chr3 (14-298)||(27632793-27633079)
chr3 (53-340)||(34506021-34506310)
chr3 (14-298)||(34517585-34517861)
chr3 (223-460)||(34372009-34372243)
chr3 (14-260)||(34474135-34474379)
chr3 (223-354)||(34463183-34463315)
chr3 (14-154)||(34526709-34526849)
chr3 (13-163)||(34463009-34463159)
chr3 (268-462)||(34375409-34375610)
chr3 (245-323)||(27628700-27628779)
chr3 (223-289)||(34487170-34487237)
chr3 (109-210)||(34512163-34512267)
chr3 (109-210)||(27626391-27626495)
chr3 (267-340)||(34526846-34526920)
chr3 (369-460)||(34474453-34474545)
chr3 (405-454)||(34463320-34463369)
chr3 (137-208)||(34375647-34375716)
chr3 (96-166)||(34372325-34372393)
chr3 (262-300)||(27626511-27626549)
chr3 (262-300)||(34512283-34512321)
chr3 (416-461)||(27626584-27626629)
chr3 (278-319)||(34474384-34474425)
chr3 (416-461)||(34512356-34512401)
[»] chr2 (5 HSPs)
chr2 (235-394)||(10533828-10533988)
chr2 (235-394)||(10527013-10527175)
chr2 (14-168)||(10533677-10533829)
chr2 (14-168)||(10526862-10527014)
chr2 (131-391)||(10531311-10531570)
[»] scaffold1215 (2 HSPs)
scaffold1215 (235-394)||(1013-1175)
scaffold1215 (14-168)||(862-1014)
[»] chr7 (2 HSPs)
chr7 (14-209)||(15741113-15741308)
chr7 (298-460)||(15743904-15744071)
[»] chr6 (2 HSPs)
chr6 (14-209)||(1575068-1575263)
chr6 (298-460)||(1572240-1572407)
[»] scaffold1067 (2 HSPs)
scaffold1067 (298-352)||(1300-1354)
scaffold1067 (403-460)||(1713-1770)
[»] chr4 (1 HSPs)
chr4 (298-352)||(13738833-13738887)


Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 34478053 - 34478499
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478053 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 34478152  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagtatacctgcattaaatgtttaaaaatgtcttatttcannn 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||       
T  34478153 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagtatacttgcgttaaatgtttaaaaatgtcttatttcattt 34478252  T
Q  214 nnnnacttggtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatatcaagctgctatataaaatttttgttca 313  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478253 ttttacttggtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatatcaagctgctatataaaatttttgttca 34478352  T
Q  314 atttcattagaagctaagcaaagacatcaatttataaaaacaagtcattagttctgttatcaaatctatcaaaccaaatctnnnnnnntggaaaatactt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||    
T  34478353 atttcattagaagctaagcaaagacatcaatttataaaaacaagttattagttctgttatcaaatctatcaaaccaaatctaaaaaaatggaaaatactt 34478452  T
Q  414 tatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34478453 tatcaataagtttttaggaacataaattataaaatccaggacgtcat 34478499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 53 - 340
Target Start/End: Original strand, 27617236 - 27617525
Alignment:
Q  53 aagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatat 152  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |  |||||    
T  27617236 aagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgatat 27617335  T
Q  153 caaatttcaattataactaagt---atacctgcattaaatgtttaaaaatgtcttatttcannnnnnnacttggtttttgactaaaatggttgcttcatg 249  Q
    |||||||||| |||||  ||||   ||||||   |||||| |||| ||||||||| |||||        ||| |||||||||||| |||||| |||||||    
T  27617336 caaatttcaaatataatcaagtacaatacctatgttaaatatttagaaatgtcttgtttcaattttc--cttagtttttgactaagatggttacttcatg 27617433  T
Q  250 ctcatctttttgttaagatcaggac-agtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacat 340  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||  | ||||| ||| | |||||||||||||| |||||||||| |||||    
T  27617434 ctcatctttttatcaagatcaggacaagtgcactatatcaagctgacacataaattttcttttcaatttcattagcagctaagcaaggacat 27617525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 27632793 - 27633079
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    |||||||||||||  |||||||||||| | |||  | | |||  ||||||||||||||||||| |||||||||||||||||| || ||  |||  || ||    
T  27632793 atcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcagcac 27632892  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagt---atacctgcattaaatgtttaaaaatgtcttatttca 210  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||   ||||||   ||||||| ||| ||||||||| |||||    
T  27632893 aaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtacaatacctatgttaaatgcttagaaatgtcttgtttca 27632992  T
Q  211 nnnnnnnacttggtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggac-agtgcactatatcaagctgctata 298  Q
            ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| ||||    
T  27632993 attttc--cttagtttttgactaaaatggttgcttcatgctcatctttttattaagatcaggacaagtgcactacatcaacctgatata 27633079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 53 - 340
Target Start/End: Original strand, 34506021 - 34506310
Alignment:
Q  53 aagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatat 152  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |  |||||    
T  34506021 aagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaaatctgatataggaacagtgaagcattcatttcgatat 34506120  T
Q  153 caaatttcaattataactaagt---atacctgcattaaatgtttaaaaatgtcttatttcannnnnnnacttggtttttgactaaaatggttgcttcatg 249  Q
    |||||||||| |||||  ||||   ||||||   |||||| |||| ||||||||| |||||        ||| |||||||||||| |||||| |||||||    
T  34506121 caaatttcaaatataatcaagtacaatacctatgttaaatatttagaaatgtcttgtttcaattttc--cttagtttttgactaagatggttacttcatg 34506218  T
Q  250 ctcatctttttgttaagatcaggac-agtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacat 340  Q
    ||||||||||| | ||||||||||| ||||||||||||||| |||  | | ||| ||| | |||||||||||||| |||||||||| |||||    
T  34506219 ctcatctttttatcaagatcaggacaagtgcactatatcaaactgacacagaaattttcttttcaatttcattagcagctaagcaaggacat 34506310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 34517585 - 34517861
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    |||||||||||||  |||||||||||| | |||  | | |||  ||||||||||||||||||| |||||||||||||||||| || ||  |||  | |||    
T  34517585 atcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagcctttattgcacgcaagac 34517684  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagtatacctgcattaaatgtttaaaaatgtcttatttcannn 213  Q
    |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |        ||||| ||| ||||||||| |||||       
T  34517685 aaatctgatataggaacagtgaagcagtcactcagataccaattttcaattataactaagtaca-------aaaatgcttagaaatgtcttgtttcaatt 34517777  T
Q  214 nnnnacttggtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggac-agtgcactatatcaagctgctata 298  Q
         ||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||| ||||    
T  34517778 ttc--cttagtttttgactaaaatggttgcttcatgctcatctttttattaagatcagaacaagtgcactacatcaagctgatata 34517861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 223 - 460
Target Start/End: Complemental strand, 34372243 - 34372009
Alignment:
Q  223 gtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatatcaagctgctatataaaatttttgttcaatttcatta 322  Q
    ||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||| || || ||||||| ||| |||||||||||||||  |    
T  34372243 gtttttgactataatggttgcctcatgctcgtctttttattaagatcaggacagtgcactataccaggcagctatatcaaaattttgttcaatttcaaga 34372144  T
Q  323 gaagctaagcaaagacatcaatttataaaaacaagtcattagttctgttatcaaatctatcaaaccaaatctnnnnnnntggaaaatactttatcaataa 422  Q
     ||   ||||||||||||  ||||||||||  ||||||||||| | ||||||||||||||||||||||||||         | | |||||||| || |||    
T  34372143 caa---aagcaaagacattcatttataaaacaaagtcattagtccagttatcaaatctatcaaaccaaatcttaaagaaacggatatactttaccagtaa 34372047  T
Q  423 gtttttaggaacataaattataaaatccaggacgtcat 460  Q
    ||||||  |||||||||||||||||| ||||| |||||    
T  34372046 gtttttctgaacataaattataaaatacaggaggtcat 34372009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 34474135 - 34474379
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    |||||||||||||||  ||||| |||| || ||| ||| |||| |||  |||||||||||||| || | |||||||| ||  ||||||  |||| ||||     
T  34474135 atcacaagataagcagtagatagctttcgcaaggttgggaagcttgaactctgcaccatcctgatttcctcctccccgaaattttcatggcacacaggat 34474234  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaagtatacctgcattaaatgtttaaaaatgtcttatttcannn 213  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||| | ||||||||| |||||||||  ||||||||||| ||||||| |||| ||       
T  34474235 aaatctgatataggagcagtgaagcagtcattcagatatcaaatttaagttataactacgtatacctgtgttaaatgtttagaaatgtcctatt-cattt 34474333  T
Q  214 nnnnacttggtttttgactaaaatggttgcttcatgctcatcttttt 260  Q
        | | | || ||||||||||||||||||||||||| ||||||||    
T  34474334 tttcaatag-ttattgactaaaatggttgcttcatgctaatcttttt 34474379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 223 - 354
Target Start/End: Original strand, 34463183 - 34463315
Alignment:
Q  223 gtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggac-agtgcactatatcaagctgctatataaaatttttgttcaatttcatt 321  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| || | ||| ||| ||||||||||||||    
T  34463183 gttttttattaaaatggttgcttcatgctcatctttttattaagatcaggacaagtgcactacatcaagctgatacagaaattttatgttcaatttcatt 34463282  T
Q  322 agaagctaagcaaagacatcaatttataaaaac 354  Q
    || || ||||||| ||||||| |||||||||||    
T  34463283 agcaggtaagcaaggacatcattttataaaaac 34463315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 34526709 - 34526849
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||||||   |||||||||||  | |||  ||| |||| || |||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  34526709 atcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggac 34526808  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatca 154  Q
    || ||||||||||||||||||  ||||||| ||||||||||    
T  34526809 aattctgatataggaacagtgtagcagtcattcagatatca 34526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 34463009 - 34463159
Alignment:
Q  13 catcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaagga 112  Q
    |||||||||||||||||||||||||||||||  || ||| |||| |||  ||||||   | ||| |||| |||||||||||  ||||||  |||| ||||    
T  34463009 catcacaagataagcaacagatacctttggcacggctgggaagcttgaactctgcatatttctgattgcctcctcccctaaattttcatggcacacagga 34463108  T
Q  113 caaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaat 163  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  34463109 caaatctgatatatgaacagtgaagcagtcattcagatatcaaatttcaat 34463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 268 - 462
Target Start/End: Complemental strand, 34375610 - 34375409
Alignment:
Q  268 tcaggacagtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacatcaatttataaaaa------caagtcat 361  Q
    |||||||||||||||||||| ||  | || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||    
T  34375610 tcaggacagtgcactatatcgagtagatagataaaacttttgttcaatttcattagaagctaagcaaagacatccatttataaaaaagaaacaaagtcat 34375511  T
Q  362 tagttctgttatcaaatctatcaaaccaaatct-nnnnnnntggaaaatactttatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    |||| | ||||||||||||| |||| |||||||        ||||||||||||||||  |||| |||   ||||||||||||||||||  |||| |||||    
T  34375510 tagtccagttatcaaatctaccaaatcaaatctaacaaaaatggaaaatactttatccgtaagctttgctgaacataaattataaaatggaggaggtcat 34375411  T
Q  461 ga 462  Q
    ||    
T  34375410 ga 34375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 27628700 - 27628779
Alignment:
Q  245 tcatgctcatctttttgttaagatcaggaca-gtgcactatatcaagctgctatataaaatttttgttcaatttcattag 323  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||||| || |||||| |||  ||||||||||||||    
T  27628700 tcatgctcatctttttattaagatcgggacatgtgcactatatcaagctgatacataaaagtttccttcaatttcattag 27628779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 34487170 - 34487237
Alignment:
Q  223 gtttttgactaaaatggttgcttcatgctcatctttttgttaagatcaggaca-gtgcactatatcaa 289  Q
    |||||||| |||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  34487170 gtttttgaataaattggttgtttcatgctcatctttttattaagatcaggacatgtgcactatatcaa 34487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 34512163 - 34512267
Alignment:
Q  109 aggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaag---tatacctgcattaaatgtttaaaaatgtctta 205  Q
    |||||| |||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||| |||||   ||||||||  ||||||||||| |||| | |||    
T  34512163 aggacatatctgatatagggacattgaagcagtcattcaaatatcaaatttcaattatatctaagtactatacctgtgttaaatgtttagaaatctttta 34512262  T
Q  206 tttca 210  Q
    |||||    
T  34512263 tttca 34512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 27626391 - 27626495
Alignment:
Q  109 aggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaag---tatacctgcattaaatgtttaaaaatgtctta 205  Q
    |||||| |||||||||||| ||| ||  ||||||| ||| ||||||||||||||||||| |||||   ||||||||  ||||||||||| |||| | |||    
T  27626391 aggacatatctgatatagggacattgtagcagtcattcaaatatcaaatttcaattatatctaagtactatacctgtgttaaatgtttagaaatctttta 27626490  T
Q  206 tttca 210  Q
    |||||    
T  27626491 tttca 27626495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 34526846 - 34526920
Alignment:
Q  267 atcaggaca-gtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaaagacat 340  Q
    ||||||||| |||||||||||||||||| || ||||| | | |||||||||||||||| |||||||||| |||||    
T  34526846 atcaggacaagtgcactatatcaagctgatacataaattctctgttcaatttcattagcagctaagcaaggacat 34526920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 34474453 - 34474545
Alignment:
Q  369 gttatcaaatctatcaaaccaaatctnnnnnnnt-ggaaaatactttatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    ||||||||||||||||||||||||||         ||||| ||||||||||| ||||||||  ||||||||||||||||||||| || |||||    
T  34474453 gttatcaaatctatcaaaccaaatctgaaaaaaaaggaaagtactttatcaacaagtttttctgaacataaattataaaatccacgaggtcat 34474545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Original strand, 34463320 - 34463369
Alignment:
Q  405 aaaatactttatcaataagtttttaggaacataaattataaaatccagga 454  Q
    ||||||||||||||| ||||||||  |||||||||||||||||| |||||    
T  34463320 aaaatactttatcaacaagtttttctgaacataaattataaaatgcagga 34463369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 34375716 - 34375647
Alignment:
Q  137 gcagtcactcagatatcaaatttcaattataactaagtatacctgcattaaatgtttaaaaatgtcttattt 208  Q
    ||||||| ||||||| ||||||||||||||||||||  |||| ||  ||||||||| |||||||| ||||||    
T  34375716 gcagtcattcagataccaaatttcaattataactaa--atacgtgtgttaaatgttgaaaaatgtattattt 34375647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 34372393 - 34372325
Alignment:
Q  96 tttcatcacacaaaggacaaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattat 166  Q
    ||||||||||||  ||||||||||||||  |||| |||||  ||| || ||||||||||||||||||||||    
T  34372393 tttcatcacacattggacaaatctgata--ggaagagtgaaacagccattcagatatcaaatttcaattat 34372325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 27626511 - 27626549
Alignment:
Q  262 ttaagatcaggacagtgcactatatcaagctgctatata 300  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  27626511 ttaagatcaacacagtgcactatatcaagctgctatata 27626549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 34512283 - 34512321
Alignment:
Q  262 ttaagatcaggacagtgcactatatcaagctgctatata 300  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  34512283 ttaagatcaacacagtgcactatatcaagctgctatata 34512321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 27626584 - 27626629
Alignment:
Q  416 tcaataagtttttaggaacataaattataaaatccaggacgtcatg 461  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  27626584 tcaataagtttttctgaacataaattataaaaaccaggaggtcatg 27626629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 34474384 - 34474425
Alignment:
Q  278 gcactatatcaagctgctatataaaatttttgttcaatttca 319  Q
    |||||||||||||||||||||||| |||||| || |||||||    
T  34474384 gcactatatcaagctgctatataatatttttattaaatttca 34474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 34512356 - 34512401
Alignment:
Q  416 tcaataagtttttaggaacataaattataaaatccaggacgtcatg 461  Q
    |||||||||||||  ||||||||||||||||| |||||| ||||||    
T  34512356 tcaataagtttttctgaacataaattataaaaaccaggaggtcatg 34512401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 235 - 394
Target Start/End: Original strand, 10533828 - 10533988
Alignment:
Q  235 aatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatatcaagctgctatataaaatttttgttcaatttcattagaagctaagcaa 334  Q
    |||| ||||||| ||||| ||||||| |||||||||||||||||||||||| || || |||| || ||| |||||||||||||||| | || ||||| ||    
T  10533828 aatgtttgcttcttgctcgtctttttattaagatcaggacagtgcactataacaggcagctaaatcaaaattttgttcaatttcatgacaatctaagaaa 10533927  T
Q  335 agacatcaatttataaaaac-aagtcattagttctgttatcaaatctatcaaaccaaatct 394  Q
    ||||||| |||||||||||| ||||||||| | | ||||||||||||||||||||||||||    
T  10533928 agacatccatttataaaaacaaagtcattactccagttatcaaatctatcaaaccaaatct 10533988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 235 - 394
Target Start/End: Original strand, 10527013 - 10527175
Alignment:
Q  235 aatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatat--caagctgctatataaaatttttgttcaatttcattagaagctaagc 332  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||||  || ||  ||| || ||| |||||||||||||||| | || ||||||    
T  10527013 aatggttgcttcatgctcgtctttttattaagatcaggacagtgcattatataacaggcacctaaatcaaaattttgttcaatttcatgacaatctaagc 10527112  T
Q  333 aaagacatcaatttataaaaac-aagtcattagttctgttatcaaatctatcaaaccaaatct 394  Q
    |||||| ||||||||||||||| || |||| ||| | ||||||||||||||||||||||||||    
T  10527113 aaagacgtcaatttataaaaacaaaatcatcagtccagttatcaaatctatcaaaccaaatct 10527175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 10533677 - 10533829
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||| ||| |||||||||||||||||| | ||| |  | |||  |||||||||||||| || |||||||||||||| ||| |||||||| |||||    
T  10533677 atcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccctaagtttttatcacacacaggac 10533776  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataa 168  Q
    |||||||  ||||||||||| |  ||| || ||||||||||||||||||||||||    
T  10533777 aaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 10533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 10526862 - 10527014
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||| ||| |||||||||||||||||| | ||| |  | |||  |||||||||||||| || ||||||||| |||  ||| |||||||| |||||    
T  10526862 atcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggac 10526961  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataa 168  Q
    |||||||  ||||||||||| |  ||| || ||||||||||||||||||||||||    
T  10526962 aaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 10527014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 391
Target Start/End: Original strand, 10531311 - 10531570
Alignment:
Q  131 agtgatgcagtcactcagatatcaaatttcaattataactaagtatacctgcattaaatgtttaaaaatgtcttatttcannnnnnnacttggtttttga 230  Q
    ||||| ||||||| ||||||| | |||||||||||||||||||||   |||  ||||||||| | |||||| |||||| |        ||| ||||||||    
T  10531311 agtgaagcagtcattcagataccgaatttcaattataactaagtaa--ctgtgttaaatgttgagaaatgtattatttaatttt----cttagtttttga 10531404  T
Q  231 ctaaaatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatatcaagctgctatataaaatttttgttcaatttcat--tagaagct 328  Q
    |||||||||||| || ||||||||  | || | ||||||||||| |||||||| ||||||| | || |||||| |||| ||||| |||||  ||||||||    
T  10531405 ctaaaatggttgttttatgctcatggtattttaaagatcaggac-gtgcactacatcaagcagatagataaaacttttattcaaattcattatagaagct 10531503  T
Q  329 aagcaaagacatcaatttata----aaaacaagtcattagttctgttatcaaatctatcaaaccaaa 391  Q
    ||||||||| |||  ||||||    |||  ||||||||||| | |||||||||||| ||||||||||    
T  10531504 aagcaaagaaatccgtttatagaagaaacaaagtcattagtccagttatcaaatctgtcaaaccaaa 10531570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 235 - 394
Target Start/End: Original strand, 1013 - 1175
Alignment:
Q  235 aatggttgcttcatgctcatctttttgttaagatcaggacagtgcactatat--caagctgctatataaaatttttgttcaatttcattagaagctaagc 332  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||||  || ||  ||| || ||| |||||||||||||||| | || ||||||    
T  1013 aatggttgcttcatgctcgtctttttattaagatcaggacagtgcattatataacaggcacctaaatcaaaattttgttcaatttcatgacaatctaagc 1112  T
Q  333 aaagacatcaatttataaaaac-aagtcattagttctgttatcaaatctatcaaaccaaatct 394  Q
    |||||| ||||||||||||||| || |||| ||| | ||||||||||||||||||||||||||    
T  1113 aaagacgtcaatttataaaaacaaaatcatcagtccagttatcaaatctatcaaaccaaatct 1175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 862 - 1014
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||| ||| |||||||||||||||||| | ||| |  | |||  |||||||||||||| || ||||||||| |||  ||| |||||||| |||||    
T  862 atcacaagacaagtaacagatacctttggcgatgttgggagtcttgaactctgcaccatcctgattacatcctcccttaaatttttatcacacacaggac 961  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataa 168  Q
    |||||||  ||||||||||| |  ||| || ||||||||||||||||||||||||    
T  962 aaatctg--ataggaacagtaaaacagccattcagatatcaaatttcaattataa 1014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 15741308 - 15741113
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||| | | |||| ||||||||||||||  ||| |||| |||  |||||||||||||| || |||||||||||||  ||| |||||||| |||||    
T  15741308 atcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgattacatcctcccctaaatttttatcacacacaggac 15741209  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaag---tatacctgcattaaatgtttaaaaatgtcttatttc 209  Q
    |||||||  |||||||||||||  | | || |||||||||||||||||||||||||||||   |||||| ||  |||||||||| ||||||||||||||    
T  15741208 aaatctg--ataggaacagtga-acggccagtcagatatcaaatttcaattataactaagtactataccagcgctaaatgtttagaaatgtcttatttc 15741113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 460
Target Start/End: Complemental strand, 15744071 - 15743904
Alignment:
Q  298 ataaaatttttgttcaatttcattagaagctaagcaaagacatcaatttataa---aaac-aagtcattagttctgttatcaaatctatcaaaccaaatc 393  Q
    |||||| ||||||||| |||||||||||||||||||||||||||  |||||||   |||| ||| ||| ||| |  |||||||||||||||||||| |||    
T  15744071 ataaaacttttgttcattttcattagaagctaagcaaagacatccgtttataaaagaaacaaaggcatcagtccaattatcaaatctatcaaaccatatc 15743972  T
Q  394 t-nnnnnnntggaaaatactttatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    |         | |||||||||||||| ||||||||   |||||||||||||||||| ||||| |||||    
T  15743971 taacaaaaacgaaaaatactttatcactaagttttgctgaacataaattataaaatgcaggaggtcat 15743904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 1575068 - 1575263
Alignment:
Q  14 atcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaaggac 113  Q
    ||||||||| | | |||| ||||||||||||||  ||| |||| |||  |||||||||||||| || |||||||||||||  ||| |||||||| |||||    
T  1575068 atcacaagacaggtaacaaatacctttggcgagattgggaagcttgaactctgcaccatcctgattacatcctcccctaaatttttatcacacacaggac 1575167  T
Q  114 aaatctgatataggaacagtgatgcagtcactcagatatcaaatttcaattataactaag---tatacctgcattaaatgtttaaaaatgtcttatttc 209  Q
    |||||||  |||||||||||||  | | || |||||||||||||||||||||||||||||   |||||| ||  |||||||||| ||||||||||||||    
T  1575168 aaatctg--ataggaacagtga-acggccagtcagatatcaaatttcaattataactaagtactataccagcgctaaatgtttagaaatgtcttatttc 1575263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 460
Target Start/End: Original strand, 1572240 - 1572407
Alignment:
Q  298 ataaaatttttgttcaatttcattagaagctaagcaaagacatcaatttataa---aaac-aagtcattagttctgttatcaaatctatcaaaccaaatc 393  Q
    |||||| ||||||||| |||||||||||||||||||||||||||  |||||||   |||| ||| ||| ||| |  |||||||||||||||||||| |||    
T  1572240 ataaaacttttgttcattttcattagaagctaagcaaagacatccgtttataaaagaaacaaaggcatcagtccaattatcaaatctatcaaaccatatc 1572339  T
Q  394 t-nnnnnnntggaaaatactttatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    |         | |||||||||||||| ||||||||   |||||||||||||||||| ||||| |||||    
T  1572340 taacaaaaacgaaaaatactttatcactaagttttgctgaacataaattataaaatgcaggaggtcat 1572407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold1067
Description:

Target: scaffold1067; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 1300 - 1354
Alignment:
Q  298 ataaaatttttgttcaatttcattagaagctaagcaaagacatcaatttataaaa 352  Q
    |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  1300 ataaaacttttgttcattttcattagaagctaagcaaagacatccgtttataaaa 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1067; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 460
Target Start/End: Original strand, 1713 - 1770
Alignment:
Q  403 ggaaaatactttatcaataagtttttaggaacataaattataaaatccaggacgtcat 460  Q
    ||||||||||| |||| ||||||||   |||||||||||||||||| ||||| |||||    
T  1713 ggaaaatacttgatcactaagttttgctgaacataaattataaaatgcaggaggtcat 1770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 13738833 - 13738887
Alignment:
Q  298 ataaaatttttgttcaatttcattagaagctaagcaaagacatcaatttataaaa 352  Q
    |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  13738833 ataaaacttttgttcattttcattagaagctaagcaaagacatccgtttataaaa 13738887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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