View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14015_low_8 (Length: 397)
Name: NF14015_low_8
Description: NF14015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14015_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 39776183 - 39775802
Alignment:
| Q |
1 |
aaatttagttatagagcaatgcatgtccaaatctttggaatatttagatagaaatttggggtgtgattaagttaagagtccacacttaattacactatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776183 |
aaatttagttatagagcaatgcatgtccaaatctttggaatattaagatagaaatttggggtgtgattaagttaagagtccacacttaattacactatgc |
39776084 |
T |
|
| Q |
101 |
agttcaagggttctaagttctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776083 |
agttcaagggttctaagttctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagtttt |
39775984 |
T |
|
| Q |
201 |
ctaattctacagcatagcgtttgatgaaccaaccatcataagcgagagacttaatagaagccaagtctttgatacatcgaccagataacccaaatgaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775983 |
ctaattctacagcatagcgtttgatgaaccaaccatcataagcgagagacttaatagaagccaagtctttgatacatcgaccagataacccaaatgaagc |
39775884 |
T |
|
| Q |
301 |
acagaaatgaccagatgcagtgtctcctacaagacgcatttcatggttgaagtgctgcaacatctaaaacaacacataaact |
382 |
Q |
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| T |
39775883 |
acaaaaatgaccagatgcagtgtctcctacaagacgcatttcatggttgaagtgctgcaacatctaaaacaacacataaact |
39775802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 120 - 377
Target Start/End: Complemental strand, 39793836 - 39793579
Alignment:
| Q |
120 |
ctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagcg |
219 |
Q |
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||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
39793836 |
ctaaccttgtcaaggccccagcgtcccataatgatggcacaacttctttgacatgatcatggagttgaccatgatacttttctaattcaacagcatagcg |
39793737 |
T |
|
| Q |
220 |
tttgatgaaccaaccatcataagcgagagacttaatagaagccaagtctttgatacatcgaccagataacccaaatgaagcacagaaatgaccagatgca |
319 |
Q |
| |
|
|||||||||||||||||||||||| ||| | || ||| |||| ||||| ||| || | ||||||||||||||||| || ||||| |||||| |
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| T |
39793736 |
tttgatgaaccaaccatcataagcaagatggatgattgaatccaattcttttgtaccgtgaaaatgcaacccaaatgaagcacaaaagtgaccggatgca |
39793637 |
T |
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| Q |
320 |
gtgtctcctacaagacgcatttcatggttgaagtgctgcaacatctaaaacaacacat |
377 |
Q |
| |
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|| | ||| | || ||||||||||||||||| || || ||||||| ||||||||||| |
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| T |
39793636 |
gtttttccatccaggcgcatttcatggttgaaatgttgtaacatctgaaacaacacat |
39793579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 39782362 - 39782238
Alignment:
| Q |
119 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || | ||||| |
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|
| T |
39782362 |
tctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttcaccatgatacttttctaattcaacggtatagc |
39782263 |
T |
|
| Q |
219 |
gtttgatgaaccaaccatcataagc |
243 |
Q |
| |
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||||||||||||| ||||||||||| |
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|
| T |
39782262 |
gtttgatgaaccatccatcataagc |
39782238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 119 - 243
Target Start/End: Complemental strand, 39788819 - 39788695
Alignment:
| Q |
119 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
218 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || | ||||| |
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| T |
39788819 |
tctaaccttgccaaagcttcagggtcccatgatgatggcacagcttctttgacatgatcgtggagttcaccatgatatctttctaattcaacggtatagc |
39788720 |
T |
|
| Q |
219 |
gtttgatgaaccaaccatcataagc |
243 |
Q |
| |
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||||||||||||| ||||||||||| |
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|
| T |
39788719 |
gtttgatgaaccagccatcataagc |
39788695 |
T |
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