View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14016_high_1 (Length: 731)
Name: NF14016_high_1
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14016_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 19 - 724
Target Start/End: Complemental strand, 11329729 - 11329016
Alignment:
| Q |
19 |
agtttgatacagagaatgccatggcaagagccacggatttgatcgaactttacaccgcttcgatggctcagaggataatctagctgttgtgtggtagttg |
118 |
Q |
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| T |
11329729 |
agtttgatacagagaatgccatggcaagagccacggatttgatcgaactttacaccgcttcgatggctcagaggataatgtagctgctgtgtggtagttg |
11329630 |
T |
|
| Q |
119 |
ggcccaaatcaaaataacaacccaacgttggtcaaaattgttcatcttgtcgatcaatagttgggtaattatccccaacttttgaccaacgtgcaggatt |
218 |
Q |
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| T |
11329629 |
ggcccaaatcaaaataacaacccaacgttggtcaaaattgttcatcttgtcgatcagtagttgggtaattatccccaacttttgaccaacgtgcaggatt |
11329530 |
T |
|
| Q |
219 |
gatccttttaacccaaagaaacggagggagggagggaatctgtgagatggagttagtgttgaagaaagatatcatgcccggtggagactggaaactgagg |
318 |
Q |
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| T |
11329529 |
gatccttttaacccaaagaaacggagggagggagggaatctgtgagatggagtaagtgttgaagaaagatatcatgcccggtggagactggaaactgaga |
11329430 |
T |
|
| Q |
319 |
tctctgccggt-agtattgcagtcaaattgattattttaattaactttaaccatcaatgctcttggaaaaagtaactgagaaaatctttttaaaagaatg |
417 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11329429 |
tctctgccggtgagtattgcagtcaaattgattattttaattaactttaaccatcgatgctcttggaaaaagtaactgagaaaatctttttaaaaggatg |
11329330 |
T |
|
| Q |
418 |
acttagaaacagaaaatagtcttcaagtccaacatcaccaagaagctcaaacatgctttcatcattcaggttctcaagcctcgcaatttcacactttttg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329329 |
acttagaaacagaaaatagtcttcaagtccaacatcaccaagaagctcaaacatgctttcatcattcaggttctcaagcctcgcaatttcacactttttg |
11329230 |
T |
|
| Q |
518 |
atatcattc--taggtcatgctcaaattctactggacaagaagaagccttgttgtttaacaagataattcaagatgtgtcaacagaaaacatgttgcttc |
615 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11329229 |
atatcattctataggtcatgctcaaattctactggacaagaagaagccttgttgtttaacaagataattcaagatgtggcaacagaaaacatgttgcttc |
11329130 |
T |
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| Q |
616 |
ccttaatt---aaaaaataaaatttaccccaaac--atgtctctagcactgctaatgacttaaattttcaaatgttgcatccatcaagaaaacaatacat |
710 |
Q |
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|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329129 |
ccttaattaaaaaaaaataaaaattaccccaaacatatgtctctagcactgctaatgacttaaattttcaaatgttgcatccatcaagaaaacaatacat |
11329030 |
T |
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| Q |
711 |
cagtattatctacc |
724 |
Q |
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|| ||| ||||||| |
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| T |
11329029 |
cattataatctacc |
11329016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 7174890 - 7174932
Alignment:
| Q |
27 |
acagagaatgccatggcaagagccacggatttgatcgaacttt |
69 |
Q |
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|||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
7174890 |
acagaggatgccgtggcaagagccacggattttatcgaacttt |
7174932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 24722891 - 24722802
Alignment:
| Q |
24 |
gatacagagaatgccatggcaagagccacggatttgatcgaactttacaccgcttcgatggctcagaggataatctagctgttgtgtggt |
113 |
Q |
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|||||| || ||||| ||||||||||||||||| ||||| | |||| || | || ||| ||||||||||||||||| |||||| ||||| |
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| T |
24722891 |
gatacaaagtatgccgtggcaagagccacggatgcgatcgcagtttaaacagtttggattgctcagaggataatctaactgttgcgtggt |
24722802 |
T |
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