View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14016_high_10 (Length: 288)
Name: NF14016_high_10
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14016_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 26310567 - 26310335
Alignment:
| Q |
17 |
tagaataagagaagaaggcaaagctcacaaatctcggttcaattgataaaaatcccaaaattattataccaaacgtcgtgatcgaggattccaactcaag |
116 |
Q |
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| T |
26310567 |
tagaataagataagaaggcaacgcccacaaatctcggctcaactgataaaaatcccaaaattattataccaaacgtcgtgatcgaggattccaactcaag |
26310468 |
T |
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| Q |
117 |
ttaatgagttcaccaatttacaaactattagaaacataatgctcaaaacttggaacaaaattgattaaattaaattactttcttttttcaattttac--- |
213 |
Q |
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| T |
26310467 |
ttaatgagttcaccaatttacaaactattagaaacataatgctcaaaccttggaacaaatttgattaaattaaattactttcttttttcaattttacaaa |
26310368 |
T |
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| Q |
214 |
aaagaatgctaagtagctagacttatgcacctt |
246 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26310367 |
aaagaatgctaagtagctagacttatgcacctt |
26310335 |
T |
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Back To:
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 47931487 - 47931567
Alignment:
| Q |
120 |
atgagttcaccaatttacaaactattagaaacataatgctcaaaacttggaacaaaattgattaaattaaattactttctt |
200 |
Q |
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||||||||||||||| || |||||||| |||||| | ||| ||| | | ||||||| |||||||||||||| |||||||| |
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| T |
47931487 |
atgagttcaccaattgactaactattaaaaacatgaggctaaaatcataaaacaaaagtgattaaattaaatgactttctt |
47931567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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