View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14016_high_5 (Length: 328)

Name: NF14016_high_5
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14016_high_5
NF14016_high_5
[»] chr7 (3 HSPs)
chr7 (24-94)||(21082653-21082723)
chr7 (116-160)||(21082723-21082767)
chr7 (225-263)||(21082832-21082870)
[»] chr3 (1 HSPs)
chr3 (81-127)||(42078068-42078114)
[»] chr1 (1 HSPs)
chr1 (82-127)||(787363-787408)


Alignment Details
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 21082653 - 21082723
Alignment:
Q  24 atttgtgaatttcctccaattttggattgttatttcgttttcaaaggttgattttgaaatagatctgtgat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21082653 atttgtgaatttcctccaattttggattgttatttcgttttcaaaggtagattttgaaatagatctgtgat 21082723  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 21082723 - 21082767
Alignment:
Q  116 tttaaaattgggatttacttactccattctgggtaaaactgctgt 160  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||    
T  21082723 tttagaattgggatttacgtactccattctgggtaaaactgctgt 21082767  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 21082832 - 21082870
Alignment:
Q  225 tttgaaaagggtcattgtgttttagttgtttacttttgt 263  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21082832 tttgaaaagggtcattttgttttagttgtttacttttgt 21082870  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 42078114 - 42078068
Alignment:
Q  81 aatagatctgtgatgaatgtattaaagtttcgatttttaaaattggg 127  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  42078114 aatagatctgtgatgaatgtattaaagtttggatttttagaattggg 42078068  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 787408 - 787363
Alignment:
Q  82 atagatctgtgatgaatgtattaaagtttcgatttttaaaattggg 127  Q
    |||||| |||||||||||||| ||||||| |||||||| |||||||    
T  787408 atagatatgtgatgaatgtatcaaagtttggatttttagaattggg 787363  T

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