View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14016_low_11 (Length: 295)
Name: NF14016_low_11
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14016_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 5789588 - 5789859
Alignment:
| Q |
6 |
aggagcacagacactatttagctcacagtagtgaatagtgagagagaatgaacaaagtagaagaagaaaaagttgatattgaactcagaaacagtttatg |
105 |
Q |
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| T |
5789588 |
aggaacacaaacactatttagctcacagtagtgaatagtgagagagaatgaacaaagtagaagaagaaaaagttgatattgaactcagaaacagtttatg |
5789687 |
T |
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| Q |
106 |
aaggatggaacaagaacaagaacaaggactagtcggnnnnnnnggtgatataatttggaaccaacccaagagacaagttttgttttttatttgagtttgt |
205 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5789688 |
aaggatggaacaagaacaagaacaaggactagttggtttttttggtgatataatttggaaccaacccaagagacaagttttgttttttatttgagtttgt |
5789787 |
T |
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| Q |
206 |
aaaagaaacaagagatgataaatggaagtgaagatgaataagaagtagtaatctacatttgtttcttgttca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5789788 |
aaaagaaacaagagatgataaatggaagtgaagatgaataagaagtagtaatctacatttgtttcttgttca |
5789859 |
T |
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