View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14016_low_20 (Length: 201)
Name: NF14016_low_20
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14016_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 21082439 - 21082616
Alignment:
| Q |
5 |
ggtagataattctagaaggtgatagatgcaacaggaaaagcgaaa---caattgatgtcgtagaaaatctaaatctccaaagcaatttgtctctatttat |
101 |
Q |
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| T |
21082439 |
ggtagatgattctagaaggtgatagatgcaacaggaaaagtgaaaaaacaattgatgtcgtagaaaatctaaatctccaaagcaatttgtctctatttat |
21082538 |
T |
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| Q |
102 |
ttaacaccgctttcccttgttccgtgctttaacaactaacgtgttttgtttctactttcatcatctccttcatagtaa |
179 |
Q |
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| T |
21082539 |
ttaacaccgctttcccttgttccgtgctttaacaactaacgtgttttgtttctactttcatcatctccttcatagtaa |
21082616 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 787631 - 787544
Alignment:
| Q |
77 |
tccaaagcaatttgtctctatttatttaa---caccgctttcccttgt-tccgtgctttaacaactaacgtgttttgtttctactttc |
160 |
Q |
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| T |
787631 |
tccaaagcaatttgtctctatttatttaagagaaccgctttcccctgtgttagtgctttaacaactaacatgttttgtttgtactttc |
787544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 42078286 - 42078201
Alignment:
| Q |
77 |
tccaaagcaatttgtctctatttatttaaca---ccgctttcccttgttccgtgctttaacaactaacgtgttttgtttctacttt |
159 |
Q |
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| T |
42078286 |
tccaaagcaatttgtcgccatatatttaagagaaccgctctcccttgtttcgtgctttaacaactaacatgttttatttgtacttt |
42078201 |
T |
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