View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14016_low_7 (Length: 319)
Name: NF14016_low_7
Description: NF14016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14016_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 39 - 281
Target Start/End: Complemental strand, 9412120 - 9411878
Alignment:
| Q |
39 |
tttaaaggatttgaagcattggaggtgtctgcagcagatcgctacgataactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctg |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9412120 |
tttaaaggatttgaagcattggaggtgtctgcagcagatcgctacgataactggaagcatgcatacaccggcattatcgcagcattgggtggtgttgctg |
9412021 |
T |
|
| Q |
139 |
tacttttggaagcttacacatggatcattgtgatcaagaggaagaaatcagagaacaagttgcaaggaatgaatggaacaaatggtaatggatatggttc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9412020 |
tacttttggaagcttacacatggatcattgtgatcaagaggaagaaatcagagaacaagttgcaaggaatgaatggaacaaatggtaatggatatggttc |
9411921 |
T |
|
| Q |
239 |
tagggtgtaggatactgagatagatatagatacttgattttgg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9411920 |
tagggtgtaggatactgagatagatatagatactggattttgg |
9411878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 1029903 - 1029979
Alignment:
| Q |
87 |
aactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctgtacttttggaagcttacacatggat |
163 |
Q |
| |
|
|||||||||||||| |||| || ||||||| || ||||| || ||||||| ||||||||||||||||| ||||| |
|
|
| T |
1029903 |
aactggaagcatgcttacattggtattattggtgctttggggggcattgctgtccttttggaagcttacacgtggat |
1029979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 55895023 - 55894913
Alignment:
| Q |
87 |
aactggaagcatgcatacaccggcattattgcagcattgggtggtgttgctgtacttttggaagcttacacatggatcattgtgatcaagaggaagaaat |
186 |
Q |
| |
|
|||||||||||||| |||| || ||||||| || ||||| || ||||||| ||||||||||||||||| ||||| | || |||||||||||| |
|
|
| T |
55895023 |
aactggaagcatgcttacattggtattattggtgctttggggggcattgctgtccttttggaagcttacacgtggatggtatgcatgaagaggaagaaag |
55894924 |
T |
|
| Q |
187 |
cagagaacaag |
197 |
Q |
| |
|
||||||||||| |
|
|
| T |
55894923 |
cagagaacaag |
55894913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University