View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14017_high_3 (Length: 355)
Name: NF14017_high_3
Description: NF14017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14017_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 13425330 - 13425659
Alignment:
| Q |
13 |
ctgagttgacaaattaaacggtcaaaaccttccaccaatgggactaatgtcatttatttagcaattcaaacaaacataagcagacagagacactcatgaa |
112 |
Q |
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| T |
13425330 |
ctgagttgacaaattaaacggtcaaaaccttccaccaatgggactaatgtcatttatttagcaattcaaacaaacataagcagacagagacactcatgaa |
13425429 |
T |
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| Q |
113 |
tgatgtttcatgttagcctttcgattagcctgcatccaatttaaaaatcttgcaaattagttttatatatccctttcaaatactcaacacaaacactgca |
212 |
Q |
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| T |
13425430 |
tgatgtttcatgttagcct------------gcatccaatttaaaaatcttgcaaattagttttatatatccctttgaaatactcaacacaaacactgca |
13425517 |
T |
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| Q |
213 |
aacacata--tatatgatgaataagtattactactagctcttacttttgtaaatttcaacttcctttcttcaaaacacactattaattgtcctatggctt |
310 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13425518 |
aacacatacttatatgatgaataagtattactactagctcttacttttgtaa-tttcaacttcctttcttcaaaacacactattaattgtcctatggctt |
13425616 |
T |
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| Q |
311 |
tgaacttttgtagccaccggtgcttcttcttcattgccgcagt |
353 |
Q |
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| T |
13425617 |
tgaacttttgtagccaccggtgcttcttcttcattgccgcagt |
13425659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 37225825 - 37225673
Alignment:
| Q |
13 |
ctgagttgacaaattaaacggtcaaaaccttccaccaatgggactaatgtcatttatttagcaattcaaacaaacataagcagacagagacactcatgaa |
112 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225825 |
ctgagttgacaaattaaactgtcaaaaccttccaccaatgggactaatgtcatttatttagcaattcaaacaaacataagcagacagagacactcatgac |
37225726 |
T |
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| Q |
113 |
tgatgtttcatgttagcctttcgattagcctgcatccaatttaaaaatcttgc |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37225725 |
tgatgtttcatgttagcctttcgattagcctgcatccaatttaaaaatcttgc |
37225673 |
T |
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