View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14017_low_2 (Length: 407)
Name: NF14017_low_2
Description: NF14017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14017_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 4744568 - 4744294
Alignment:
| Q |
7 |
atggacatcatcatgtaggtttacttttggagtacctaataagaattaactacttggtaagcatcaaattcatttccctcttcctttccttaataaaatt |
106 |
Q |
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| T |
4744568 |
atggaaatcatcatgtaggtttacttttggagtacctaataagaattaactacttggtaagcatcaaattcatttccctcttcctttccttaataaaatt |
4744469 |
T |
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| Q |
107 |
gaaccacaccacgtctctcctatcacttttgttgaaattgtctaattcaatgttttaggaatgcaatttatgttggggtgttacaacttcccacacactt |
206 |
Q |
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| T |
4744468 |
gaaccacaccacgtctctcctatcacttttgttaaaattgtctaattcaatgttttaggaatgcaatttatgttggggtgttacaacttcccacacactt |
4744369 |
T |
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| Q |
207 |
tagtttaaataatgttgtcctttgaacttccttgacaagcatagaaagtatttcattcgtctctaattataagat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
4744368 |
tagtttaaataatgttgtcctttgaacttccttgacaagcatagaaagtattccattcgtctctaattgtaagat |
4744294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 4751146 - 4751072
Alignment:
| Q |
200 |
cacactttagtttaaataatgttgtcctttgaacttccttgacaagcatagaaagtatttcattcgtctctaatta |
275 |
Q |
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| T |
4751146 |
cacactttaatttaaataat-ttgtcctttaaactttcttggcaagcatagaacgtattcccttcctctctaatta |
4751072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 4730559 - 4730521
Alignment:
| Q |
200 |
cacactttagtttaaataatgttgtcctttgaacttcct |
238 |
Q |
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| T |
4730559 |
cacactttaatttaaataatgttgtcctttgaacttcct |
4730521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 4734330 - 4734294
Alignment:
| Q |
202 |
cactttagtttaaataatgttgtcctttgaacttcct |
238 |
Q |
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| T |
4734330 |
cactttaatttaaataatgttgtcctttgaacttcct |
4734294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 6890551 - 6890598
Alignment:
| Q |
344 |
accatacttcttattaatattgttgattgccttaaaatatgaaaaatc |
391 |
Q |
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| T |
6890551 |
accatattccttattaatattgttgattgccttaaaatatgaaaaatc |
6890598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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