View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14018_high_17 (Length: 335)
Name: NF14018_high_17
Description: NF14018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14018_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 89 - 268
Target Start/End: Original strand, 30677355 - 30677533
Alignment:
| Q |
89 |
gaaggagaatgggccatgaagcttgttgtttttctttgttctgatgcgtttaaacttggagaagacaaagttgcagtcaaactagtgagagagaaaataa |
188 |
Q |
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| T |
30677355 |
gaaggagaatgggccatgaagcttgttgtttttctatgttctgatgcgtttaaacttggagaagacaa-gttgcagtcaaactagtgagaaaaaaaataa |
30677453 |
T |
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| Q |
189 |
tgatgtggtgagctatgattgttgtgggtgtgtgttaaaagagtgtgtccaaaggtgtgaccctaacatttctcaactat |
268 |
Q |
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| T |
30677454 |
ggatgtgatcagctatgattggtgtgggtgtgtgttaaaagagtgtgtccaaaggtgtgatcctagcatttctcaactat |
30677533 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 30677252 - 30677336
Alignment:
| Q |
12 |
agacgggatggggtcagatgggagaagtacgacatagtttgtgtgatacaaattggaaggagtgacagattgaatccgaaggagaa |
97 |
Q |
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| T |
30677252 |
agacgggatggg-tcagatgggagaagtacgacatagtttgtgtgatacaaattggaaggagcgacagactgaatccgaaggagaa |
30677336 |
T |
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