View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14018_high_4 (Length: 538)

Name: NF14018_high_4
Description: NF14018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14018_high_4
NF14018_high_4
[»] chr5 (2 HSPs)
chr5 (28-517)||(30301741-30302212)
chr5 (123-175)||(32125456-32125508)
[»] chr4 (3 HSPs)
chr4 (319-517)||(23062148-23062346)
chr4 (319-517)||(32880787-32880985)
chr4 (137-175)||(30106158-30106196)
[»] chr2 (1 HSPs)
chr2 (319-517)||(28592755-28592953)
[»] chr6 (3 HSPs)
chr6 (319-517)||(25907150-25907348)
chr6 (391-467)||(13108960-13109035)
chr6 (124-174)||(15120656-15120706)
[»] chr8 (4 HSPs)
chr8 (325-517)||(21279150-21279342)
chr8 (123-182)||(42586659-42586718)
chr8 (123-184)||(32550093-32550154)
chr8 (131-175)||(20098802-20098846)
[»] chr7 (3 HSPs)
chr7 (324-517)||(9817000-9817193)
chr7 (324-517)||(10718925-10719118)
chr7 (123-182)||(44415970-44416029)
[»] chr1 (3 HSPs)
chr1 (329-517)||(15229734-15229922)
chr1 (123-180)||(19070949-19071006)
chr1 (123-180)||(19118839-19118896)
[»] scaffold0068 (1 HSPs)
scaffold0068 (123-180)||(58496-58553)
[»] chr3 (2 HSPs)
chr3 (123-186)||(17229130-17229194)
chr3 (136-182)||(40243423-40243469)
[»] scaffold0025 (1 HSPs)
scaffold0025 (123-182)||(66750-66809)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 517
Target Start/End: Original strand, 30301741 - 30302212
Alignment:
Q  28 agaactaaacagattcttttaaagaccgcctagtaatccaaattgaataagatgactttaacgtgttccggatatttctaacaacataaaaattgaaaat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  30301741 agaactaaacagattcttttaaagaccgcctagtaatccaaattgaagaagatgactttaacatgttccagatatttctaacaacataaaaattgaaaat 30301840  T
Q  128 ctattttcttcaaacataaggaggtaagatataaactagttaaaaatctttttttaaaatgaatannnnnnnnagataataaataaacacaaatagcttc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  30301841 ctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttttt-----------------tagataataaataaacacaaatagcttc 30301923  T
Q  228 agannnnnnnnctttcaaaatctctaaaaataatctccagatttctaacacaaaatctannnnnnnnnnnaaagtaaaacaaacataccctaaatttttt 327  Q
    |||        ||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  30301924 agattttttttctttcaaaatctctaaaaataatctccagatttctaacacaaaatctattttttttcttaaagtaaaacaaacataccctaaatttttt 30302023  T
Q  328 catgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttg 427  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30302024 catgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttg 30302122  T
Q  428 cnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30302123 caaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttggtaatataatagaaaaagttgtgtctgatgatg 30302212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 32125508 - 32125456
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatc 175  Q
    |||||||||||| |||||  | |||||||||| |||| |||||||||||||||    
T  32125508 aaaatctatttttttcaagaacaaggaggtaacatatgaactagttaaaaatc 32125456  T

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Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 319 - 517
Target Start/End: Complemental strand, 23062346 - 23062148
Alignment:
Q  319 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 418  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23062346 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 23062247  T
Q  419 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23062246 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctggtgatg 23062148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 319 - 517
Target Start/End: Original strand, 32880787 - 32880985
Alignment:
Q  319 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 418  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||     
T  32880787 aaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaaggggtacgaattgctgatgaacaaggcatgc 32880886  T
Q  419 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32880887 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 32880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 30106196 - 30106158
Alignment:
Q  137 tcaaacataaggaggtaagatataaactagttaaaaatc 175  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30106196 tcaaacataaggaggtaagatatgaactagttaaaaatc 30106158  T

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Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 319 - 517
Target Start/End: Complemental strand, 28592953 - 28592755
Alignment:
Q  319 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 418  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592953 aaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 28592854  T
Q  419 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592853 gtcaggttgcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 28592755  T

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Target: chr6 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 319 - 517
Target Start/End: Complemental strand, 25907348 - 25907150
Alignment:
Q  319 aaattttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 418  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25907348 aaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatga 25907249  T
Q  419 gtcaggttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    ||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25907248 gtcaggtggcaaaagaatattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 25907150  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 13109035 - 13108960
Alignment:
Q  391 gtacgaattgctgatgaacaaggcatgagtcaggttgcnnnnnnntattttgagactttatttttagagagcaatag 467  Q
    ||||||||||||||||||||||||||| ||||| ||||       |||||||| ||||||||||||||||| |||||    
T  13109035 gtacgaattgctgatgaacaaggcatgcgtcagattgc-aaagaatattttgaaactttatttttagagagtaatag 13108960  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 15120656 - 15120706
Alignment:
Q  124 aaatctattttcttcaaacataaggaggtaagatataaactagttaaaaat 174  Q
    ||||||||||| ||||||||||||||||||||| |  ||||||||||||||    
T  15120656 aaatctatttttttcaaacataaggaggtaagacacgaactagttaaaaat 15120706  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 325 - 517
Target Start/End: Complemental strand, 21279342 - 21279150
Alignment:
Q  325 tttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcagg 424  Q
    |||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  21279342 tttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctggataatgatgaacgggtacgagttgctgatgaacaaggcatgtgtcagg 21279243  T
Q  425 ttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    ||||       |||||||| ||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||| |||||| ||||||||    
T  21279242 ttgcaaaagaatattttgacactttatttttagagagtaatagtactcctgcaccggttgtagatataatagaaaaatttgtgtttgatgatg 21279150  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 42586718 - 42586659
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttttt 182  Q
    |||||||||||| |||| ||| ||||||| |||| || ||||||||||||||||||||||    
T  42586718 aaaatctatttttttcagacacaaggaggcaagacatgaactagttaaaaatcttttttt 42586659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 32550093 - 32550154
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatctttttttaa 184  Q
    |||||||||||| |||||| | |||||||||| | || ||| ||||||||||||||||||||    
T  32550093 aaaatctatttttttcaaaaacaaggaggtaacacatgaacaagttaaaaatctttttttaa 32550154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 20098802 - 20098846
Alignment:
Q  131 ttttcttcaaacataaggaggtaagatataaactagttaaaaatc 175  Q
    |||| ||||||||||||||||||||| || || ||||||||||||    
T  20098802 tttttttcaaacataaggaggtaagaaatgaaatagttaaaaatc 20098846  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 517
Target Start/End: Complemental strand, 9817193 - 9817000
Alignment:
Q  324 ttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcag 423  Q
    |||||||||| || ||||||| ||||| ||||||||||| |||||||||||||| |||||||  |||||  || || | ||||| ||||| ||| |||||    
T  9817193 ttttcatgctgcagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcag 9817094  T
Q  424 gttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    |||||       ||||||||||| |||||||| ||||| ||||  |||||||||||||||||  | || |||||||||||||| ||||||||||    
T  9817093 gttgcaaaagggtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg 9817000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 324 - 517
Target Start/End: Complemental strand, 10719118 - 10718925
Alignment:
Q  324 ttttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcag 423  Q
    |||||||||| || ||||||| ||||| ||||||||||| |||||||||||||| |||||||  |||||  || || | ||||| ||||| ||| |||||    
T  10719118 ttttcatgctgcagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggggtcagagtttcagatgagcaaggtatgtgtcag 10719019  T
Q  424 gttgcnnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
    |||||       ||||||||||| |||||||| ||||| ||||  |||||||||||||||||  | || |||||||||||||| ||||||||||    
T  10719018 gttgcaaaagggtattttgagacattatttttggagagtaatatcactcgtgcaccggttgtagacattatagaaaaagttgtttctgatgatg 10718925  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 44416029 - 44415970
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttttt 182  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  44416029 aaaatctatttttttcaaacataaggagataagatatgaactagttaaacatcttttttt 44415970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 517
Target Start/End: Original strand, 15229734 - 15229922
Alignment:
Q  329 atgcttcaaccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatgaacaaggcatgagtcaggttgc 428  Q
    |||||||| |||| ||  |||| ||||||||||| |||||||||||||| |||||||  || || ||| || | ||||||||||| ||| |  |||||||    
T  15229734 atgcttcagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatgtgggagtccgagtttcagatgaacaaggtatgcgctaggttgc 15229833  T
Q  429 nnnnnnntattttgagactttatttttagagagcaatagtactcgtgcaccggttgttaatataatagaaaaagttgtgtctgatgatg 517  Q
           |||||||| || |||||||| ||||| || || |||||| || |||||||  | || |||||||||||| | |||| |||||    
T  15229834 taaagggtattttgaaacattatttttggagagtaacagcactcgtacatcggttgtagacattatagaaaaagttctttctgttgatg 15229922  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 19070949 - 19071006
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttt 180  Q
    |||||||||||  ||||||||||||||||||||| || | ||||||||||||| ||||    
T  19070949 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatcatttt 19071006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 19118839 - 19118896
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttt 180  Q
    |||||||||||  ||||||||||||||||||||| || | ||||||||||||| ||||    
T  19118839 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatcatttt 19118896  T

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Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 58496 - 58553
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttt 180  Q
    |||||||||||  ||||||||||||||||||||| || | ||||||||||||| ||||    
T  58496 aaaatctatttatttcaaacataaggaggtaagacatgagctagttaaaaatcatttt 58553  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 17229130 - 17229194
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaat-ctttttttaaaa 186  Q
    |||||||||||| || ||||||||| |||||||| ||||||||| |||||||  |||||||||||    
T  17229130 aaaatctattttttttaaacataagaaggtaagacataaactagataaaaataatttttttaaaa 17229194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 40243423 - 40243469
Alignment:
Q  136 ttcaaacataaggaggtaagatataaactagttaaaaatcttttttt 182  Q
    |||||||||| |||||||| | ||||| |||||||||||||||||||    
T  40243423 ttcaaacatagggaggtaaaacataaattagttaaaaatcttttttt 40243469  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 66750 - 66809
Alignment:
Q  123 aaaatctattttcttcaaacataaggaggtaagatataaactagttaaaaatcttttttt 182  Q
    ||||| |||||| |||||||||||||||||  ||||| |||||||| |||||| ||||||    
T  66750 aaaatatattttattcaaacataaggaggtctgatatgaactagttgaaaatcatttttt 66809  T

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