View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14019_high_10 (Length: 363)
Name: NF14019_high_10
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 26427361 - 26427148
Alignment:
| Q |
1 |
gaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427361 |
gaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttag |
26427262 |
T |
|
| Q |
101 |
caaggtaattgnnnnnnnnnnnnnnnnnncgcaatattcttatattattagagctcatagttgaacttaattacttgttttgtgttcttaggtcttatta |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26427261 |
caaggtaattgtttttgcttttttattttcgcaatattcttatattattagagctcatagttgaatttaattacttgttttgtgttcttaggtcttatta |
26427162 |
T |
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| Q |
201 |
acactccaagtgaa |
214 |
Q |
| |
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|||||||||||||| |
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| T |
26427161 |
acactccaagtgaa |
26427148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 26427070 - 26427006
Alignment:
| Q |
292 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26427070 |
aatacctagagtgtgtttgttcattgcatatatatttggttactttgtgtgaagaccctttgctt |
26427006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 28009520 - 28009630
Alignment:
| Q |
1 |
gaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009520 |
gaccaaagatgaacacagcagagatgcttaatgctgctgctaattatgtcaagtttcttcaagctcaagttggaatgcttcaacttatggaaacatttag |
28009619 |
T |
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| Q |
101 |
caaggtaattg |
111 |
Q |
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||||||||||| |
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| T |
28009620 |
caaggtaattg |
28009630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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