View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14019_high_11 (Length: 359)
Name: NF14019_high_11
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 2 - 346
Target Start/End: Original strand, 4878061 - 4878405
Alignment:
| Q |
2 |
tgttttagcttgaatattgtcgaatactatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttact |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878061 |
tgttttagcttgaatattgtcgaatactatctactaaatgatagttgagttgtgatgagttaagtttataaatagtttgttgacatttcatagttttact |
4878160 |
T |
|
| Q |
102 |
tgatataggctccaaaaattggaatgtattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878161 |
tgatataggctccaaaaattggaatggattatcaccctcatactgtgttaaaacatcaaaattgacataaaaccaataaaccattagtttaaatggtgaa |
4878260 |
T |
|
| Q |
202 |
atctattacaacagatagtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcaca |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878261 |
atctattacaacagatagtgcagaaatttaattttggtatagagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcaca |
4878360 |
T |
|
| Q |
302 |
aatttgcaaaatgctagaatacatttatcatgtaccggtgtattc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878361 |
aatttgcaaaatgctagaatacatttatcatgtaccggtgtattc |
4878405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 12534215 - 12534096
Alignment:
| Q |
211 |
aacagatagtgcagaaatttaattttggtat-agagctacttgaaaagaaatctaaacattattctcaaaagccaaaaactgcatatgcacaaatttgca |
309 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| | |||||| |||||| |||||| ||||| | ||| || ||| ||||| |||||||||||||||||||| |
|
|
| T |
12534215 |
aacaaatagtgcagaaatataattttggtatcacagctacatgaaaacaaatctgaacataactcttaacagcaaaaaagtgcatatgcacaaatttgca |
12534116 |
T |
|
| Q |
310 |
aaatgctagaatacatttat |
329 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
12534115 |
aaatggtggaatacatttat |
12534096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University