View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14019_high_12 (Length: 358)
Name: NF14019_high_12
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 35696891 - 35696534
Alignment:
| Q |
1 |
catttgtattgaattgttgatggatatggaaggtgaacaagtacaacgataactggaagaaacaatggttcggagcaggaatattctacgaaggaagcga |
100 |
Q |
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| T |
35696891 |
catttgtgttgaattgttgatggatatggaaggtgaacaagtacaatgataactggaagaaacaatggttcggagcaggaatattctacgaaggaagcga |
35696792 |
T |
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| Q |
101 |
agaagtagaagtcgacgtattcaagaaacttgagaaacgcaaagtattaagcaacgttgaaaaagcaggattattatccaaagctgaagagttcggagtc |
200 |
Q |
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| T |
35696791 |
agaagtagaagtcgacgtattcaagaaacttgagaaacgcaaagtattaagcaacgttgaaaaagcaggattattatccaaagctgaagagttcggagtc |
35696692 |
T |
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| Q |
201 |
acgctctcttcaatcgagaagctaggtcttttttctaaggcagaagaacttggtttactcagcttattagagaaactcgccgcggtctctccttccgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35696691 |
acgctctcttcaatcgagaagctaggtcttttttctaaggcagaagaacttggtttactcagcttattagagaaactcgccgcggtctctccttccgttt |
35696592 |
T |
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| Q |
301 |
tggcttctctggcacttccaacgcttctggctgctgttgcgacggtggttcttgttcc |
358 |
Q |
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| T |
35696591 |
tggcttctctggcacttccaacgcttctggctgctgttgcgacggtggttcttgttcc |
35696534 |
T |
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