View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14019_high_1_N (Length: 605)
Name: NF14019_high_1_N
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 145 - 604
Target Start/End: Complemental strand, 1583084 - 1582625
Alignment:
| Q |
145 |
atgaattggccaaacccaaattctaagataaataatgaaatttatatgttcattgttcttttcatattcctttctccataactgcacttcataatttatc |
244 |
Q |
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| T |
1583084 |
atgaattggccaaacccaaattctaagataaattatgaaatttatatgttcattgttcttttcatattcctttctccataactgcacttcataatttatc |
1582985 |
T |
|
| Q |
245 |
ctaaacttactctatttatttatttactacactcctcttattaaactagttttgttgtgttttattggaaaatagagaaagaaacaaatttacctaatgc |
344 |
Q |
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| T |
1582984 |
ctaaacttactctatttatttatttactacactcctcttattaaactagttttgttgtgttttattggaaaatagagaaagaaacaaatttacctaatgc |
1582885 |
T |
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| Q |
345 |
tacggaggaggacctttggttcatacacgatcacactaagtgcattgaggatgctgaggcacctgcttggattaacttcatnnnnnnnnnnnnnnnnntt |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
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| T |
1582884 |
tacggaggaggacctttggttcatacacgatcacactaagtgcattgaggatgatgaggcacctgcttggattaatttcattgatgatgatgatgatgtt |
1582785 |
T |
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| Q |
445 |
tctccattttttcgtaagactatctaattttcttttcatctgcatttggtgcattaataaagtatatgctgtgctgcattcttcaaaagtttactttgac |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582784 |
tctccattttttcgtaagactatctaattttcttttcatctgcatttggtgcattaataaagtatatgctgtgctgcattcttcaaaagtttactttgac |
1582685 |
T |
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| Q |
545 |
atcaagtgaatcaatatcttagcttttagcatcaaaattacttgtgaaacttggtcttga |
604 |
Q |
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| T |
1582684 |
atcaagtgaatcaatatcttagcttttagcatcaaaattacttgtgaaacttggtcttga |
1582625 |
T |
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