View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14019_high_2 (Length: 593)

Name: NF14019_high_2
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14019_high_2
NF14019_high_2
[»] chr8 (2 HSPs)
chr8 (102-174)||(12933811-12933883)
chr8 (114-151)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (102-174)||(14177081-14177153)
chr4 (60-174)||(28608680-28608794)
chr4 (113-166)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (144-181)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (144-181)||(796698-796735)
chr6 (144-181)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (144-181)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 12933883 - 12933811
Alignment:
Q  102 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 174  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933883 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  114 ggttgctccatataaatctcctcttccaaatctccatg 151  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 14177153 - 14177081
Alignment:
Q  102 tcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 174  Q
    |||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177153 tcaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 28608680 - 28608794
Alignment:
Q  60 ctcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaat 158  Q
    ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||    
T  28608680 ctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaat 28608778  T
Q  159 gcagttttcacatcca 174  Q
    ||||| || |||||||    
T  28608779 gcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  113 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 166  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  144 tctccatgaagaaatgcagttttcacatccaactgctc 181  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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