View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14019_high_7 (Length: 392)
Name: NF14019_high_7
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_high_7 |
 | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 14860722 - 14861086
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860722 |
agtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatt |
14860821 |
T |
|
| Q |
101 |
tattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860822 |
tattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcat |
14860921 |
T |
|
| Q |
201 |
acaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14860922 |
acaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgtt |
14861021 |
T |
|
| Q |
301 |
gccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14861022 |
gccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggattt |
14861086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 73 - 365
Target Start/End: Original strand, 18676864 - 18677156
Alignment:
| Q |
73 |
aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18676864 |
aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatattaatcatttcgtaaat |
18676963 |
T |
|
| Q |
173 |
caaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgc |
272 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18676964 |
caaaatatcatggctttgacttttgcatgcaaatattttcattacataattgattatgtgattttcaaattggcctaattatttcaatgctatattctgc |
18677063 |
T |
|
| Q |
273 |
attcatgatattttcttttctatccgttgccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggattt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18677064 |
attcatgatattttcttttctatccgttggcaattaaacatgtaatcgttggaatgaaatcaagtttttattaccatgcaattgaatggattt |
18677156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 14858699 - 14858965
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14858699 |
agtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatt |
14858798 |
T |
|
| Q |
101 |
tattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcat |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14858799 |
tattttacaaattgcataattgattttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcat |
14858898 |
T |
|
| Q |
201 |
acaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatat |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14858899 |
acaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatat |
14858965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18675948 - 18676028
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaagtaattttacatgaaaatatttt |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18675948 |
agtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttt |
18676028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 32983742 - 32983807
Alignment:
| Q |
39 |
cacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt |
104 |
Q |
| |
|
|||| |||||||||| || ||| ||||||||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
32983742 |
cacattgattttcatatatagtgattttacattaaattatttttccatgaaaacccataatttatt |
32983807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 39924893 - 39925187
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttt |
106 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||| ||||||| || | || ||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
39924893 |
aaaaagttctcattaaaataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatttttacataaaaagtcataatttatttt |
39924992 |
T |
|
| Q |
107 |
acaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39924993 |
acaaattgcataattggttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaattatcatggctttgacttttgcatacaaat |
39925092 |
T |
|
| Q |
207 |
attttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39925093 |
attttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttgtatccgttg |
39925187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 5027768 - 5027635
Alignment:
| Q |
9 |
aaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttta |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||| || ||||| ||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
5027768 |
aaaagctctcatgaaaataaatcacacactcacaatgattttcatttaaatgtgattttgcattaaaatatttttacatgaaaacttataatttatttta |
5027669 |
T |
|
| Q |
108 |
caaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
|
|
| T |
5027668 |
caaattgcataattctttttgacattaaaaatat |
5027635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 3273443 - 3273579
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcag-cacaatgattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttat |
103 |
Q |
| |
|
|||||||||||| |||||||||||| | || |||| |||||||||| |||| |||||| |||||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
3273443 |
aaaaagctctcaagaaaataaatca-tacactcacagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttat |
3273541 |
T |
|
| Q |
104 |
tttacaaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3273542 |
tttgaaaattgcataattggttttgacattaaaaatat |
3273579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 3276853 - 3276989
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcag-cacaatgattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttat |
103 |
Q |
| |
|
|||||||||||| |||||||||||| | || |||| |||||||||| |||| |||||| |||||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
3276853 |
aaaaagctctcaagaaaataaatca-tacactcacagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttat |
3276951 |
T |
|
| Q |
104 |
tttacaaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3276952 |
tttgaaaattgcataattggttttgacattaaaaatat |
3276989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 14309008 - 14308930
Alignment:
| Q |
15 |
tctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaag |
92 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| |||| || ||||||||| ||||||||||| ||||||||| |
|
|
| T |
14309008 |
tctcatgaaaataaatcacacactcacaatgattatcatttaaatgtgattttacattaaaatatttttgcatgaaaag |
14308930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 14405442 - 14405148
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttt |
106 |
Q |
| |
|
|||||| |||||| |||||||||||| ||||||| ||||||| || | || ||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
14405442 |
aaaaagttctcattaaaataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatttttacataaaaagtcataatttatttt |
14405343 |
T |
|
| Q |
107 |
acaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaat |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14405342 |
acaaattgtataattggttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaattatcatggctttgacttttgcatacaaat |
14405243 |
T |
|
| Q |
207 |
attttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14405242 |
attttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttgtatccgttg |
14405148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 40667295 - 40667153
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataat |
99 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||| |||||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||| |
|
|
| T |
40667295 |
agtggataaaaagctctcgagaaaataaatcacacactcacaataattttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaat |
40667196 |
T |
|
| Q |
100 |
ttattttacaaattgcataattggttttgacattgaaaatata |
142 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
40667195 |
ttattttacaaattgcataattgattttgacattaaaaatata |
40667153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1125 - 893
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataat |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| ||||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||| |
|
|
| T |
1125 |
agtggttaaaaagctctcaaaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaat |
1026 |
T |
|
| Q |
100 |
ttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| || |||||||| ||||| ||| ||||||||| |
|
|
| T |
1025 |
ttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattaccatggctttaacttttgca |
934 |
T |
|
| Q |
200 |
tacaaatattttcattacataattgattatgtgattctcaaa |
241 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
933 |
ta-taatattttcattacatgattgattacgtggttctcaaa |
893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2278 - 2510
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataat |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| ||||||| |||| || ||||| ||| ||||||||||||||| |||||||| ||| |
|
|
| T |
2278 |
agtggttaaaaagctctcaaaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatatttttacataaaaagtcagaat |
2377 |
T |
|
| Q |
100 |
ttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| || |||||||| ||||| ||| ||||||||| |
|
|
| T |
2378 |
ttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattaccatggctttaacttttgca |
2469 |
T |
|
| Q |
200 |
tacaaatattttcattacataattgattatgtgattctcaaa |
241 |
Q |
| |
|
|| |||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
2470 |
ta-taatattttcattacatgattgattacgtggttctcaaa |
2510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 89997 - 89769
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcactgcagcacaatgattttcatcta--aagtaattttacatgaaaatatttttacatgaaaagtcataa |
98 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||| | || |||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
89997 |
agtggttaaaaagctctcaagaaaataaatcacacactcacaatgtttttattatatgaagtgattttacatgaaaatatttttgcatgaaaggtcataa |
89898 |
T |
|
| Q |
99 |
tttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgac-ttttg |
197 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||| |||||||||||||| ||| | || ||| |||||||||| | ||||| |||||| ||||| |
|
|
| T |
89897 |
tttatttccaaaactgcataattgattttgacattaaaaatatatttgagtaagatttggatttattcataaatcaaatgaccatggatttgactttttg |
89798 |
T |
|
| Q |
198 |
catacaaatattttcattacataattgatt |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
89797 |
cata-aaatattttcattacataattgatt |
89769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 21197956 - 21198034
Alignment:
| Q |
287 |
cttttctatccgttgccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggattt |
365 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21197956 |
cttttctatccgttggcaattaaacatataatcgttggaatgaaatcaagtttttaataccatgcaattgaatggattt |
21198034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 16850678 - 16850741
Alignment:
| Q |
78 |
tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
||||||||||| ||| || |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16850678 |
tttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat |
16850741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 20537 - 20670
Alignment:
| Q |
9 |
aaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatttta |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||| || ||||| || |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
20537 |
aaaagctctcatgaaaataaatcacacactcacaatgattttcatttaaatgtgattttgaattaaaatatttttacatgaaaaattataatttatttta |
20636 |
T |
|
| Q |
108 |
caaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
|
|
| T |
20637 |
caaattgcataattctttttgacattaaaaatat |
20670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 31986 - 31847
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcagcacaatgattttcatct-aaagtaattttacatgaaaatatttttacatgaaaagtcataatttatttt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||| || | ||||||||||| ||||||||| ||||| |||||||| | |||| ||||| |
|
|
| T |
31986 |
aaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgatttt |
31887 |
T |
|
| Q |
107 |
acaaattgcataattggttttgacattgaaaatatatttga |
147 |
Q |
| |
|
| |||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
31886 |
agaaattgtataatt-gttttgacattaaaaatatatttga |
31847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 20728157 - 20728018
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcagcacaatgattttcatct-aaagtaattttacatgaaaatatttttacatgaaaagtcataatttatttt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||| || | ||||||||||| ||||||||| ||||| |||||||| | |||| ||||| |
|
|
| T |
20728157 |
aaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgatttt |
20728058 |
T |
|
| Q |
107 |
acaaattgcataattggttttgacattgaaaatatatttga |
147 |
Q |
| |
|
| |||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
20728057 |
agaaattgtataatt-gttttgacattaaaaatatatttga |
20728018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 24779619 - 24779680
Alignment:
| Q |
80 |
tttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
24779619 |
tttacatgaaaatttataatttattttacaaattgcataattatttttgacattaaaaatat |
24779680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 8484 - 8566
Alignment:
| Q |
39 |
cacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataatt |
121 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||||| ||||||||| ||||||| ||| | ||||||||||||| |
|
|
| T |
8484 |
cacaatgtttttcatataaagtgattttacataaaaatatttttgcatgaaaagccataattaattatgtaaattgcataatt |
8566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 39037740 - 39037876
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcag-cacaatgattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttat |
103 |
Q |
| |
|
|||||||||||| |||||||||||| | || ||||||||||||||| |||| |||||| |||||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
39037740 |
aaaaagctctcaagaaaataaatca-tacactcacaatgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttat |
39037838 |
T |
|
| Q |
104 |
tttacaaattgcataattggttttgacattgaaaatat |
141 |
Q |
| |
|
||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
39037839 |
tttgaaaatggcataattggttttgacattaaaaatat |
39037876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 113616 - 113542
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcag-cacaatgattttcatctaaagtaattttacatgaaaatattttt |
82 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| ||||||| ||||||| |
|
|
| T |
113616 |
aaaaagctctcatgaaaataaatcac-gcagtcacaataattttcatctaacatgattttgcatgaaattattttt |
113542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 354570 - 354488
Alignment:
| Q |
39 |
cacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataatt |
121 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||| ||||||||||| ||| |||| |||||| ||| | ||||||||||||| |
|
|
| T |
354570 |
cacaatgtttttcatataaagtgattttacataaaaatatttttgcatataaagccataatcaattatgtaaattgcataatt |
354488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 8826295 - 8826379
Alignment:
| Q |
20 |
tgaaaataaatcactgcagcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt |
104 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||||||||||| | ||||| | ||||| |||||||| |||||||||| |
|
|
| T |
8826295 |
tgaaaataaatcacaccgtcacaatgattttcatataaagtaatttttcttgaaactttttttgcatgaaaaactataatttatt |
8826379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18070008 - 18069976
Alignment:
| Q |
1 |
agtggttaaaaagctctcatgaaaataaatcac |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18070008 |
agtggttaaaaagctctcatgaaaataaatcac |
18069976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 8595482 - 8595388
Alignment:
| Q |
8 |
aaaaagctctcatgaaaataaatcactgcagcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttatt |
104 |
Q |
| |
|
||||||||||||| |||||||||||| || | ||||| |||| || |||| || ||||| ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8595482 |
aaaaagctctcattaaaataaatcaca-ca-ctcaatggtttttatttaaaagtgattttgcatgaaaatattttt-catgaaaagccataatttatt |
8595388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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