View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14019_low_1 (Length: 336)
Name: NF14019_low_1
Description: NF14019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14019_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 44 - 298
Target Start/End: Complemental strand, 9399165 - 9398911
Alignment:
| Q |
44 |
aagtaaatgattaattaattcttttaattttatatgtttcacaggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagt |
143 |
Q |
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| T |
9399165 |
aagttaatgattaattaattcttttaatttcatatgtttcacaggatttctttacagcaggaacagacacaacatcaatttcaacagaatgggcattagt |
9399066 |
T |
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| Q |
144 |
tgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaat |
243 |
Q |
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| T |
9399065 |
tgagctaatgaacaacccttcattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaat |
9398966 |
T |
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| Q |
244 |
cttccttatattcaagccataataaaagaaacatttcgtctacacccacaggttc |
298 |
Q |
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| T |
9398965 |
cttccttatattcaagccataataaaagaaacatttcgtctacacccaccggttc |
9398911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 9381720 - 9381492
Alignment:
| Q |
64 |
cttttaattttatatgtttcacaggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccctt |
163 |
Q |
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| T |
9381720 |
cttttaatttcgtatgtttcacaggattttttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaatgaacaaccctt |
9381621 |
T |
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| Q |
164 |
cattgttacaaaaagctcgtgaagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccat |
263 |
Q |
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| T |
9381620 |
cattattacaaaaagctcgtgaagaaatagacaatatagtagggaaaaatagactagtagatgaatctgacggtccaaatcttccttatattcaagccat |
9381521 |
T |
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| Q |
264 |
aataaaagaaacatttcgtctacacccac |
292 |
Q |
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| T |
9381520 |
aataaaagaaacatttcgtctacacccac |
9381492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 23244271 - 23244478
Alignment:
| Q |
86 |
aggatttcttcacagcaggaacagacacaacatcaatttcaacagaatgggcattagttgagctaat-gaacaacccttcattgttacaaaaagctcgtg |
184 |
Q |
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||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| || || || || ||||| || || | ||||||||||||| |
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| T |
23244271 |
aggatttcttcacagcaggaacagatacaacagcaatatcaacagaatgggcattagtagaactcataaaaaaacccatctttactccaaaaagctcgtg |
23244370 |
T |
|
| Q |
185 |
aagaaatagacaatgtagtagggaaaaacagactagtagatgaatctgacggaccaaatcttccttatattcaagccataataaaagaaacatttcgtct |
284 |
Q |
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||||||| ||||| ||||||| ||||||||| ||| || ||||| ||| ||||| | || ||| | ||||| || |||| ||||||||||||||| |
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| T |
23244371 |
aagaaatcgacaacatagtaggcaaaaacagaacagttgaagaatccgacatttcaaatatgccatatctacaagcaatcataagagaaacatttcgtct |
23244470 |
T |
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| Q |
285 |
acacccac |
292 |
Q |
| |
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||||||| |
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| T |
23244471 |
tcacccac |
23244478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 23223371 - 23223331
Alignment:
| Q |
238 |
ccaaatcttccttatattcaagccataataaaagaaacatt |
278 |
Q |
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| T |
23223371 |
ccaaaccttccttatatacaagccattataaaagaaacatt |
23223331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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